Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5 116 5e-21 seq3 102 1e-16 >seq5 Length=5133333 Score = 116 bits (128), Expect = 5e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||||||||| || | || || |||||||| || |||||| | | ||| | | || Sbjct 4458433 GTTCCTGCATTGAAAATAGTGGGTGATGCATGAGTGAACCATCTCTGAGACATCAAATGA 4458492 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 || |||| | ||| || || ||||| | ||| |||||||| || || || | |||||| Sbjct 4458493 TAAGTTTTGACAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGCAACCCTCATCAA 4458551 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| |||||||| ||||| || ||| | | |||||||| || || | ||||| Sbjct 4458552 CATGTGCTGAGGCCTTTCCACAACCTTTCCTTGAACCTTCAACAAATAGGACCTCTCCAA 4458611 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| |||||||| || | || |||||| || |||||||| || Sbjct 4458612 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTATCGTAAATTAT 4458659 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | || || | ||| | || | || |||||| | |||||| Sbjct 4457651 CCCCCTTGATCAACATAGCGAGCAGTATCATTGAACACACGCAGCATTGGGACAATACCA 4457710 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || ||||| |||||||| ||| ||| ||||| ||| | || ||||| | | ||| || Sbjct 4457711 TTTGATGTCCCATTTGTGCCACGAATGTAACTGCCAGTGGCACGAATGTCATGAATAGAA 4457770 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || ||||||||||| || |||| ||| || ||||| || || || || Sbjct 4457771 ACACCAATTCCTCCTGCTGATTTGCTGATTATAGCACACTCCTTCAAAGTGTCATATATT 4457830 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 |||||||| || |||| ||||| ||||| || || ||| Sbjct 4457831 CCCTCTATGCTATCATTTTTCATGCAGAGAAGGAAGCAACTA 4457872 Score = 89.7 bits (98), Expect = 7e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 ||| ||||||| ||||| || | |||||||| || |||||| |||| ||| || Sbjct 4457160 TCTTTTTCATACTGAGTGTACAATTTCTCAAATTCTTCACCCCAACAATCAGACAAACCT 4457219 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAAA 78016 || |||| | ||||| | ||| ||||| | |||| | | || ||||| || |||||| Sbjct 4457220 GGCGCTTCACTGGGGCAAAACAAAGACCATTGCCCAT-TGCTTTGAACTCTTTCCATAAA 4457278 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||||| | ||| |||||| ||| | |||||| | | ||| ||||| Sbjct 4457279 GAGATCAGACACCCAAAGAGCATAAAACAAATCTCGAGCACGATGCTCTTC 4457329 >seq3 Length=29476785 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| ||||| || | || ||||||||||| || |||||| ||| || | | | | Sbjct 2833264 GTTCCGGCATTGAAAAGAGTTGGAGATGCATGGGTGAACCATCTTTGGGACATCATGTGG 2833323 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 || |||| | | | || |||||||| | ||| |||||||| || || || | |||||| Sbjct 2833324 TAAGTTTTGACAACAGAATCTATGTCATCCTTG-TGAATTCCAACAGCGACCCTCATCAA 2833382 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| |||||||| ||||| || ||| ||| | ||||| | ||| || | || | Sbjct 2833383 CATGTGCTGAGGCCTTTCCACAACCTTTCCATTAACCTTCAAGAGGTACGACCTCTCAAG 2833442 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| || |||||||| | || |||||| || || || || || Sbjct 2833443 GGTTTTGAACCCAAAATAATCATAGTCAAAGTCCCTGTCATAGATTAT 2833490 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | ||| || | ||| | || | ||||||||||| || ||| Sbjct 2832868 CCTCCTTGATCAACATACCGGGCAGTATCATTGAACACACGCAACATTGGAACAACACCA 2832927 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || || |||||||| ||| ||||||||||||| | || || || || || || Sbjct 2832928 TTGGAAGTCCCATTTGTACCACGAATATAACTTCCAGTGGCACGTATGTTGTGAACAGAG 2832987 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || || | ||| || ||||| || || || || Sbjct 2832988 ACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCATATATC 2833047 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||||||||| ||||| ||||| | ||| || || ||| Sbjct 2833048 CCCTCTATACTATCATCTTTCATGCACACAAGGAAGCAACTA 2833089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694351544759040