Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5 125 1e-23 seq3 125 1e-23 seq11 84.2 3e-11 >seq5 Length=5133333 Score = 125 bits (138), Expect = 1e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | ||| | || | || |||||| | ||| || Sbjct 4457651 CCCCCTTGATCAACATAGCGAGCAGTATCATTGAACACACGCAGCATTGGGACAATACCA 4457710 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||| ||| ||| ||||| ||| |||||||| | | |||||| Sbjct 4457711 TTTGATGTCCCATTTGTGCCACGAATGTAACTGCCAGTGGCACGAATGTCATGAATAGAA 4457770 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || ||||||||||| ||| ||||| |||||| ||||| |||||||| || Sbjct 4457771 ACACCAATTCCTCCTGCTGATTTGCTGATTATAGCACACTCCTTCAAAGTGTCATATATT 4457830 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 |||||||| ||||||| ||||| ||||| || || ||| Sbjct 4457831 CCCTCTATGCTATCATTTTTCATGCAGAGAAGGAAGCAACTA 4457872 Score = 116 bits (128), Expect = 5e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||||||||| || | || || |||||||||||||||||| | | ||| | | || Sbjct 4458433 GTTCCTGCATTGAAAATAGTGGGTGATGCATGAGTGAACCATCTCTGAGACATCAAATGA 4458492 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 || |||| | | | | || || || | ||| |||||||| ||||| || | |||||| Sbjct 4458493 TAAGTTTTGACAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGCAACCCTCATCAA 4458551 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| |||||||| | ||| ||| ||| | | |||||||| || || | ||||| Sbjct 4458552 CATGTGCTGAGGCCTTTCCACAACCTTTCCTTGAACCTTCAACAAATAGGACCTCTCCAA 4458611 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| || | || |||||| || |||||||| || Sbjct 4458612 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTATCGTAAATTAT 4458659 >seq3 Length=29476785 Score = 125 bits (138), Expect = 1e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | |||||| | ||| | || | ||||||||||| || || Sbjct 2832868 CCTCCTTGATCAACATACCGGGCAGTATCATTGAACACACGCAACATTGGAACAACACCA 2832927 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || || |||||||| ||| ||||||||||||| ||||| || || || ||| Sbjct 2832928 TTGGAAGTCCCATTTGTACCACGAATATAACTTCCAGTGGCACGTATGTTGTGAACAGAG 2832987 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| ||| | |||||| ||||| || ||||| || Sbjct 2832988 ACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCATATATC 2833047 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||||||||||||||| ||||| | ||| || || ||| Sbjct 2833048 CCCTCTATACTATCATCTTTCATGCACACAAGGAAGCAACTA 2833089 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| ||||| || | || ||||||||||| ||||||||| ||| || | | | | Sbjct 2833264 GTTCCGGCATTGAAAAGAGTTGGAGATGCATGGGTGAACCATCTTTGGGACATCATGTGG 2833323 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 || |||| | ||| | ||||| || | ||| |||||||| |||||||| | |||||| Sbjct 2833324 TAAGTTTTGACAACAGAATCTATGTCATCCTTG-TGAATTCCAACAGCGACCCTCATCAA 2833382 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| |||||||| | ||| ||| ||| ||| | ||||| | ||| || | || | Sbjct 2833383 CATGTGCTGAGGCCTTTCCACAACCTTTCCATTAACCTTCAAGAGGTACGACCTCTCAAG 2833442 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| || |||||||| | || |||||| || || || || || Sbjct 2833443 GGTTTTGAACCCAAAATAATCATAGTCAAAGTCCCTGTCATAGATTAT 2833490 >seq11 Length=48970052 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| ||||||||||| |||||||| ||||||||| ||||| || || || ||||| | Sbjct 47447301 ACAAGCAAAATCACAGTGAAGGCCCTCATCTCTAGAGATTAACTCATTTGAGAATGTCAA 47447242 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727 || ||||| | ||| | |||||| ||||| ||||| || Sbjct 47447241 ACCTGGCATCAATCCTCTCTTTTTAAGCCAGAATATGGC 47447203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712608802859520