Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_031098.1 Length=40749 Score E Sequences producing significant alignments: (Bits) Value seq14271 262 1e-65 seq24717 127 5e-25 seq22584 96.9 9e-16 seq9002 84.2 6e-12 >seq14271 Length=544 Score = 262 bits (290), Expect = 1e-65 Identities = 236/294 (80%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 30901 ATGAGCCTCGaaaaaaaaTCTACGCATGTTCGTTTATCTCCCGAAAACCATGAACGTGCA 30960 |||||||| || |||||||| || |||||||| || ||||| |||||||||||| | ||| Sbjct 404 ATGAGCCTTGATAAAAAATCCACACATGTTCGGTTGTCTCCTGAAAACCATGAAAGAGCA 345 Query 30961 AAAGTACTTGCAGAAATTAAGGGTAAAGACCTTGCTCAATACCTTGCTTACTTACTTGAA 31020 |||| ||||| |||||||| || ||||| | || || || ||||| || | | ||| Sbjct 344 AAAGCTCTTGCCGAAATTAAAGGGAAAGATTTAGCCCAGTATCTTGCATATCTTTTAGAA 285 Query 31021 AAAGAAATCGCAGGTGAGTGGCATGTACTTAATTTACAAGCAAAATCATTTGAGCGCTTG 31080 |||||||| || ||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 284 AAAGAAATTGCGGGTGAGTGGCATGTACTTAATTTACAAGCAAAAACCTTTGAGCGCTTG 225 Query 31081 GGATTAGGAGCTTTGATGCGGGATCTATCAACCGAAGTAATTTTTGGTGAGGGATCGGAA 31140 ||| || ||||||| |||||||| || |||||||| ||| | ||||||| ||| Sbjct 224 GGAGTATCAGCTTTGTTGCGGGATTTAAGCACCGAAGTTGAATTTCGAGAGGGATTTGAA 165 Query 31141 GGGATTAACGGGGATTTAGA-CAAATAAAAAGCCTGATCTCGTAAATCAGGCTT 31193 |||||| | | |||| | |||| ||||||||||||| | ||||||||||| Sbjct 164 GGGATTGA-GAATATTTCAAGCAAAGAAAAAGCCTGATCGCAGAAATCAGGCTT 112 >seq24717 Length=291 Score = 127 bits (140), Expect = 5e-25 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 22972 GGGCAAGCGCCTTAATGCGTATGATGATGGGGTGGGTGTTTGGACTATTGGTTTTGGAAC 23031 ||| ||||| |||| ||| ||||| ||||||||||| || ||||| |||||||| || || Sbjct 291 GGGTAAGCGACTTACTGCCTATGACGATGGGGTGGGAGTGTGGACGATTGGTTTCGGTAC 232 Query 23032 CATTAAGTATCCGAATGGTGTCCGAGTGAAAAAAGGTGATACCTGCACTGAACAGCAAGC 23091 || |||||||| || | ||| | ||||| ||||||||||| ||| ||||| Sbjct 231 CACAGTTTATCCGAACGGCATTAAAGTTATGAAAGGCGATACCTGCACGGAAGCACAAGC 172 Query 23092 TGAAACCTATTTGAAAAATGATTTAACTAAGTTTGAAGTAGCTATTAATAAATTAGTTAA 23151 | | || || || | ||||||||| ||||||||| ||| | || || || || Sbjct 171 TAAGACATACATGGCACATGATTTAAAGAAGTTTGAATCTGCTGTCAACAATGAGGTGAA 112 Query 23152 AGTGCCTCTTAGTCAGAATCAATTCGATGCACT 23184 | | || |||| ||| ||||| ||||| ||||| Sbjct 111 AATACCGCTTAATCAAAATCAGTTCGACGCACT 79 >seq22584 Length=318 Score = 96.9 bits (106), Expect = 9e-16 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 37860 AAAGCAGTTGAAGCCTACAAAAGAAATACTTACAAAGATATGAAAGCGTAGGTATTCCAT 37919 |||||| ||||| || | ||||||||||||||| | || ||||||| ||||||| Sbjct 114 AAAGCAATTGAAAATTATCGTAAAAATACTTACAAAGAATTAAAGGCGTAGGGATTCCAT 173 Query 37920 TATTGCGGAAACAAGAGTATAGTTTTTATATACTGGTCGTATTACG 37965 |||| ||||||| | ||||||||| |||||||||||||||||| Sbjct 174 TATTTCGGAAACCAAGGTATAGTTTCACTATACTGGTCGTATTACG 219 >seq9002 Length=1006 Score = 84.2 bits (92), Expect = 6e-12 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 7237 TATAGCGGCAGAGGCGTCCTATTTGGCTCTTATTTAAAAGATTTGGTCAAGCCTATAGAT 7296 || ||||| | || || || |||||||||||||| |||||| |||| ||||||| ||| Sbjct 472 TACAGCGGTCGTGGTGTTCTGTTTGGCTCTTATTTGAAAGATATGGTTAAGCCTACTGAT 413 Query 7297 TATCGAGCAACAGACTCTAAAGCCGTACTACTGCAAAATGAAGTGA 7342 || | || ||||| || || ||| | | ||||||||||||||| Sbjct 412 TACCAAGTCACAGATTCAAAGGCCACAGTGTTGCAAAATGAAGTGA 367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130218678150352