Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq4 183 3e-41 >seq4 Length=30110606 Score = 183 bits (202), Expect = 3e-41 Identities = 502/748 (67%), Gaps = 27/748 (4%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||||||||||| ||||||||| ||||| |||||||| || || | || || ||| | Sbjct 6029148 TTTGGTAATCGCCAACGCGTTTCTCGAAGAAGTTAGTCTTCCCTTGAAGCGAGATAAGTT 6029207 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||| |||||||||| ||| | | | | || ||| || || | | | | Sbjct 6029208 CCATCCAATCAAAAGGGTTACTCACACCGTACACCTTCCCGTAGCCAAGCGCACCCAAAA 6029267 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 |||||||||||||| || ||||| || | ||| || || | |||||| || | | || Sbjct 6029268 GCCTATCCGCTACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCA-AC 6029326 Query 16854 GTAC-CGGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 | | |||||| || || || ||| || | ||| || | ||||| || | || Sbjct 6029327 GCGCACGGAAGCGCGTCGCACACAAACTCCCT-CTCGATCTCCACCGCGTCGCACACGAT 6029385 Query 16912 ACTAGCAACTCGTTCCTCG--GACGGTGTATGTTTAAGAT-GTTTAAACATCAGACATGC 16968 | || || || ||| || | | |||| | || || || | | || || || Sbjct 6029386 AGACTTCACGCGCTCTTCGCTGA-GCTTCGTGTTGAGGAGCGTGTAGAGA--AGGCACGC 6029442 Query 16969 GAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGG 17028 ||| ||||| |||| || ||||| | ||| |||||||| || || || | || || Sbjct 6029443 GAAGTCGCAGTGTAGACCTTCGTCACGCGAGATCAGTTCGTTTGAGAAAGTAAGGCCAGG 6029502 Query 17029 CATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACC 17088 ||| |||||||||||| | ||| || || | | ||| || || ||||| ||||| Sbjct 6029503 CATGAGTCCTCGTTTCTTAAGCCAGAAGATTGAGCAGAAGCTTCCGGAGAAGAAGATACC 6029562 Query 17089 CTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTC-GCG-TCTTTGTTACGAATC 17146 |||||| | || || || || | |||||| ||| | ||| | | || || || ||| Sbjct 6029563 TTCGACGCAAGCGAAAGCTATGATTCGTTCAGCGAAGGTCTGAGATCCTT----CG-ATC 6029617 Query 17147 CATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC-CTTAA- 17204 |||||| | |||||| ||||| | | | |||| || ||||| || || | || Sbjct 6029618 CATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCGGAAG 6029677 Query 17205 --ATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACAT 17262 || | ||||| || ||| ||| | || || ||||||| ||| || |||||||| Sbjct 6029678 AGATGGTCTCTCTCTT---TGT-TGTCTTTGATGTAAGTATCGAGGAGGAGACTGTACAT 6029733 Query 17263 TTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTAT 17322 |||||||| |||||||| || || ||||| |||||||| ||| || || |||| | Sbjct 6029734 CTCGGAGTGGATGTTCTCAATCGCGATCTGGAATCCGTAGAAGGCACGCGCCTCCGAGAC 6029793 Query 17323 TTGAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGG 17381 ||| || || || | ||| ||| || ||||| || |||||| ||||| ||||| Sbjct 6029794 TTGGACATCGGACAT-GAAACGTGAGGCGAGATTCTCTAGCACGATTCCGTCTGACGCGG 6029852 Query 17382 CGAAAAACGCCAATATATGCTTAATGAA 17409 | || || || | | || || ||||| Sbjct 6029853 CAAAGAAGGCGAGGACGTGTTTGATGAA 6029880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517304863664160