Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq4 150 2e-31 seq9 132 5e-26 seq6 122 9e-23 >seq4 Length=30110606 Score = 150 bits (166), Expect = 2e-31 Identities = 492/749 (66%), Gaps = 29/749 (4%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||||||||| | ||||||||| |||||||||||||| || || | | || ||| || Sbjct 6029148 TTTGGTAATCGCCAACGCGTTTCTCGAAGAAGTTAGTCTTCCCTTGAAGCGAGATAAGTT 6029207 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTA 16031 |||| ||||||| || ||| | | | | ||| ||| || || || | | | Sbjct 6029208 CCATCCAATCAAAAGGGTTACTCACACCGTACACCTTCCCGTAGCCAAG---CGCACCCA 6029264 Query 16032 AT---CTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-A 16087 | ||||| |||||||| || ||||| |||| ||| || || | || || || | | Sbjct 6029265 AAAGCCTATCCGCTACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCA 6029324 Query 16088 AGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATG 16147 | || || ||||| || | | ||| | || ||| | ||||| || | | Sbjct 6029325 ACGCGCAC-GGAAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCGCACACG 6029383 Query 16148 ATA----TCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACA 16203 ||| || |||| | | || | || ||| ||| | | | | || || Sbjct 6029384 ATAGACTTCACGCGCTCTTCGCTGAG-CTTCGT---GTTGAGGAGCGTGTAGAGAAGGCA 6029439 Query 16204 CGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCC 16263 |||||||||||| ||||| |||||||| | ||| |||||||| || ||||| | || Sbjct 6029440 CGCGAAGTCGCAGTGTAGACCTTCGTCACGCGAGATCAGTTCGTTTGAGAAAGTAAGGCC 6029499 Query 16264 TGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGAATA 16322 ||||| |||||||||||| | |||||| || | |||| || || || ||||| | Sbjct 6029500 AGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATTG-AGCAGAAGCTTCCGGAGAAGAAGA 6029558 Query 16323 TACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGT---AGCATCTTTATTAC 16379 |||| || || | || ||||| || | |||||| ||| | || || ||| || | Sbjct 6029559 TACCTTCGACGCAAGCGAAAGCTATGATTCGTTCAGCGAAGGTCTGAG-ATCCTT----C 6029613 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 | ||||||||| |||| | ||||| | | ||| || ||||| || || Sbjct 6029614 G-ATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGC 6029672 Query 16440 TAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACA 16499 || | | ||| | || | | || | || || ||||| | || | |||||||| Sbjct 6029673 GGAAGAGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTATCGAGGAGGAGACTGTACA 6029732 Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTA 16559 | || ||||| |||||||| || || ||||| ||||| |||||| || ||||||| | Sbjct 6029733 TCTCGGAGTGGATGTTCTCAATCGCGATCTGGAATCCGTAGAAGGCACGCGCCTCCGAGA 6029792 Query 16560 TTTGTACTTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCA 16618 ||| || || || | ||| ||| || || ||||| |||||| ||||| || Sbjct 6029793 CTTGGACATCGGACATGAAA-CGTGAGGCGAGATTCTCTAGCACGATTCCGTCTGACGCG 6029851 Query 16619 GCAAAAAACGCCAATATGTGCTTAATGAA 16647 ||||| || || | | ||| || ||||| Sbjct 6029852 GCAAAGAAGGCGAGGACGTGTTTGATGAA 6029880 >seq9 Length=38094978 Score = 132 bits (146), Expect = 5e-26 Identities = 490/750 (65%), Gaps = 31/750 (4%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||||||||| | ||||||||| |||||||||||||| || || | | || ||| || Sbjct 5073532 TTTGGTAATCGCCAACGCGTTTCTCGAAGAAGTTAGTCTTCCCTTGAAGCGAGATAAGTT 5073591 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTA 16031 |||| ||||||| || ||| | | | | ||| |||||| || || | | | Sbjct 5073592 CCATCCAATCAAAAGGGTTACTCACACCGTACACCTTCCCGTACCCAAG---CGCACCCA 5073648 Query 16032 AT---CTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-A 16087 | ||||| |||||||| || ||||| |||| ||| || || | || || || | | Sbjct 5073649 AAAGCCTATCCGCTACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCA 5073708 Query 16088 AGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATG 16147 | || | ||||| || | | ||| | || ||| | ||||| || | | Sbjct 5073709 ACGCGCAT-GGAAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCGCACACG 5073767 Query 16148 ATA----TCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACA 16203 || || |||| | |||| | || ||| ||| | | | | || || Sbjct 5073768 ATCGACTTCACGCGCTCTTCGCTCAG-CTTCGT---GTTGAGGAGCGTGTAGAGAAGGCA 5073823 Query 16204 CGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCC 16263 ||||||||||| ||||| |||||||| | ||| |||||||| || ||||| | || Sbjct 5073824 AGCGAAGTCGCAGTGTAGACCTTCGTCACGCGAGATCAGTTCGTTTGAGAAAGTAAGGCC 5073883 Query 16264 TGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGAATA 16322 ||||| ||||||||||| | |||||| || | |||| || || || ||||| | Sbjct 5073884 AGGCATGAGACCTCGTTTCTTAAGCCAGAAGATTG-AGCAGAAGCTTCCGGAGAAGAAGA 5073942 Query 16323 TACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGT---AGCATCTTTATTAC 16379 |||| || || | || |||||||| | |||||| ||| | || || ||| | | Sbjct 5073943 TACCTTCGACGCAAGCGAAAGCGATGATTCGTTCAGCGAAGGTTTGAG-ATCCGT----C 5073997 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 | |||||| || |||| | |||||| | | ||| || ||||| || || Sbjct 5073998 G-ATCCATGTCATAGCCCACTGGGCTTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGC 5074056 Query 16440 TAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACA 16499 || | | ||| | || | | | || | || || ||||| | || | |||||||| Sbjct 5074057 GGAAGAGATGGTCTCTCTCTTTATTGTCTTTGATGTAAGTATCGAGGAGGAGACTGTACA 5074116 Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG-AAGCATCGAGCCTCCGCT 16558 | || ||||| || ||||| || || ||||| ||||| ||| ||||| || ||||||| Sbjct 5074117 TCTCGGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCA-CGCGCCTCCGAG 5074175 Query 16559 ATTTGTACTTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617 | ||| || || || | ||| || || || ||||| |||||| ||||| || Sbjct 5074176 ACTTGGACATCGGACATGAAA-CGGGAAGCGAGATTCTCTAACACGATTCCGTCTGACGC 5074234 Query 16618 AGCAAAAAACGCCAATATGTGCTTAATGAA 16647 || || || || | | ||| || ||||| Sbjct 5074235 GGCGAAGAAGGCGAGGACGTGTTTGATGAA 5074264 >seq6 Length=26391736 Score = 122 bits (134), Expect = 9e-23 Identities = 307/455 (67%), Gaps = 15/455 (3%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || |||||||||||||| ||||| |||||||| | ||| |||||||| || ||||| Sbjct 4051006 AGGCACGCGAAGTCGCAGTGTAGACCTTCGTCACGCGAGATGAGTTCGTTTGAGAAAGTA 4051065 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317 | || ||||| |||||| ||||| | |||||| || | |||| || || || || Sbjct 4051066 AGGCCAGGCATGAGTCCTCGCTTCTTAAGCCAGAAGATTG-AGCAGAAGCTTCCGGAGAA 4051124 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGT---AGCATCTTT 16374 ||| ||||| || || | || |||||||| | |||||| ||| | || || ||| | Sbjct 4051125 GAAGATACCTTCGACGCAAGCGAAAGCGATGATTCGTTCAGCGAAGGTCTGAG-ATCCGT 4051183 Query 16375 ATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTAT 16434 || ||||||||| |||| | ||||| | | ||| || || || || Sbjct 4051184 ----CG-ATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGGATGGTCTCAAT 4051238 Query 16435 GGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACT 16494 || || | | ||| | || | | || | || || ||||| | || | ||| Sbjct 4051239 CGCGCGGAAGAGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTATCGAGGAGGAGACT 4051298 Query 16495 GTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG-AAGCATCGAGCCT 16553 |||||| || ||||| || ||||| || || ||||| ||||| ||| ||||| || |||| Sbjct 4051299 GTACATCTCGGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCA-CGCGCCT 4051357 Query 16554 CCGCTATTTGTACTTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCA 16612 ||| | ||| || || || | ||| || || || ||||| |||||| ||||| Sbjct 4051358 CCGAGACTTGGACATCGGACATGAAA-CGGGAAGCGAGATTCTCTAACACGATTCCGTCT 4051416 Query 16613 CTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 || || || || || | | ||| || ||||| Sbjct 4051417 GACGCGGCGAAGAAGGCGAGGACGTGTTTGATGAA 4051451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511176515591840