Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1 122 6e-23 seq19 114 9e-21 seq15 111 1e-19 >seq1 Length=23241285 Score = 122 bits (134), Expect = 6e-23 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 |||||||| |||||| ||||||||| || ||||| || ||||| || ||||| | | Sbjct 16357660 TGAGCATCCCCTATAACATGGATAAAATCACCAGGAACAAGATTGCACACGTGAGCGAGC 16357601 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 |||||||| | |||||| ||| ||||||||||| ||||| || | ||||| || ||| Sbjct 16357600 ATGCAAGTAAGAAGAGAGTAGGACGCAATGTTAAACGGCACACCAAGGCCCATGTCTGCT 16357541 Query 101828 GATCTTTGATACAGTTGACAGGAAAGCTTTCCATC 101862 || | ||||||| ||||||||| || | ||||| Sbjct 16357540 GAACGCTGATACATTTGACAGGAGAGTTCCCCATC 16357506 >seq19 Length=26736940 Score = 114 bits (126), Expect = 9e-21 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 |||||||| |||||| ||||||||| || ||||| || ||||| || ||||| | | Sbjct 22319632 TGAGCATCCCCTATAACATGGATAAAATCACCAGGAACAAGATTGCACACGTGAGCGAGC 22319691 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 |||||||| | |||||| ||| ||||||||||| ||||| || | ||||| || ||| Sbjct 22319692 ATGCAAGTAAGAAGAGAGTAGGACGCAATGTTAAACGGCACACCAAGTCCCATGTCTGCT 22319751 Query 101828 GATCTTTGATACAGTTGACAGGAAAG 101853 || | ||||||| |||||| || || Sbjct 22319752 GAACGCTGATACATTTGACACGAGAG 22319777 >seq15 Length=30521352 Score = 111 bits (122), Expect = 1e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 |||||||| |||||| ||||||||| || ||||| || ||||| || |||| | | Sbjct 24339619 TGAGCATCCCCTATAACATGGATAAAATCACCAGGAACAAGATTGCACACGCGAGCGAGC 24339678 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 |||||||| | |||||| ||| ||||||||||| ||||| || | ||||| || ||| Sbjct 24339679 ATGCAAGTAAGAAGAGAGTAGGACGCAATGTTAAAGGGCACACCAAGGCCCATGTCTGCT 24339738 Query 101828 GATCTTTGATACAGTTGACAGGAAAG 101853 || | ||||||| |||||| || || Sbjct 24339739 GAACGCTGATACATTTGACACGAGAG 24339764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361087364904212