Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq13 95.1 1e-14 seq11 93.3 4e-14 seq10 93.3 4e-14 seq20 89.7 4e-13 seq12 89.7 4e-13 >seq13 Length=24101694 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| || |||||||| || ||||| || || ||| | | Sbjct 2029536 ATGCAAATCTTCGTCAAGACTTTGACGGGAAAGACCATCACTTTGGAGGTGGAGAGCTCT 2029477 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | |||| || || |||||||| ||| | || ||| || Sbjct 2029476 GACACCATCGACAACGTTAAAGCCAAGATCCAGGATAAAGAGGGTATTCCACCAGACCAG 2029417 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | ||||| || || || ||||| ||||| || ||| |||| || ||||| Sbjct 2029416 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGACGGCAGGACTTTGGCTGACTACAAC 2029357 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||| |||||||||||| |||| || || | || ||||| Sbjct 2029356 ATTCAGAAGGAGTCTACTCTTCACTTGGTCTTGCGTCTCCGTGGAGG 2029310 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||| | || ||||| ||||| ||||||||||| || || || || ||| Sbjct 3265243 GATAAGGAAGGTATCCCTCCGGATCAGCAAAGGCTTATCTTTGCCGGTAAGCAGCTAGAA 3265184 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||| | || |||| || ||||| || ||||||||||| ||||||||| Sbjct 3265183 GATGGCCGTACCTTGGCTGACTACAACATCCAGAAGGAATCCACTCTTCAC 3265133 >seq11 Length=49703607 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| ||||| |||| || ||||||||||| ||||| || || || | | Sbjct 21795561 ATGCAGATATTTGTCAAGACTTTGACGGGCAAGACCATCACTCTAGAGGTCGAGAGCTCT 21795502 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | || | ||| || ||| || |||||||| | || || || Sbjct 21795501 GATACGATTGACAATGTGAAGGCCAAGATTCAAGACAAAGAAGGGATCCCACCGGACCAG 21795442 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||||| |||||||| || |||||||| |||||| ||| | || ||||||||| Sbjct 21795441 CAGAGACTAATCTTTGCCGGAAAACAACTCGAAGATGGTCGCACTTTAGCGGATTACAAT 21795382 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 |||||||| || || ||||||||| Sbjct 21795381 ATTCAGAAAGAGTCAACTCTTCAC 21795358 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || |||||| | || ||||| ||||| ||||||||||| || || || || ||| Sbjct 3123906 GACAAGGAAGGTATCCCTCCGGATCAGCAAAGGCTTATCTTTGCCGGTAAGCAGCTAGAA 3123847 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 || || || |||| || ||||| || ||||||||||||||||||||| |||| Sbjct 3123846 GACGGCAGGACCTTGGCTGACTACAACATCCAGAAGGAATCTACTCTTCACTTGGT 3123791 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 28975 TCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCAGAGACGGTGGCCG 29034 |||| || ||||||||||| ||||| || || || | | || ||| | | | Sbjct 21794583 TCAAGACTTTGACGGGCAAGACCATCACTCTAGAGGTCGAGAGCTCTGATACGATTGACA 21794524 Query 29035 ATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCT 29094 || | ||| || ||| || |||||||| | || || || || ||||| |||| Sbjct 21794523 ATGTGAAGGCCAAGATTCAAGACAAAGAAGGGATCCCACCGGACCAGCAGAGACTAATCT 21794464 Query 29095 TTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAAT 29154 |||| || |||||||| |||||| ||| | || ||||||||||||||||| || | Sbjct 21794463 TTGCCGGAAAACAACTCGAAGATGGTCGCACTTTAGCGGATTACAATATTCAGAAAGAGT 21794404 Query 29155 CTACTCTTCAC 29165 | ||||||||| Sbjct 21794403 CAACTCTTCAC 21794393 >seq10 Length=25316904 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| ||||| |||| || ||||||||||| ||||| || || || | | Sbjct 18593505 ATGCAGATATTTGTCAAGACTTTGACGGGCAAGACCATCACTCTAGAGGTCGAGAGCTCT 18593446 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | || | ||| || ||| || |||||||| | || || || Sbjct 18593445 GATACGATTGACAATGTGAAGGCCAAGATTCAAGACAAAGAAGGGATCCCACCGGACCAG 18593386 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||||| |||||||| || |||||||| |||||| ||| | || ||||||||| Sbjct 18593385 CAGAGACTAATCTTTGCTGGAAAACAACTCGAAGATGGTCGCACTTTAGCGGATTACAAT 18593326 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 |||||||| || || ||||||||| Sbjct 18593325 ATTCAGAAAGAGTCAACTCTTCAC 18593302 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| ||||| | || || ||||| |||||||||||||| || |||||||| ||| Sbjct 18594096 GATAAGGAAGGCATCCCTCCGGACCAACAGAGACTTATCTTTGCCGGTAAACAACTTGAA 18594037 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||| | || | |||||||||||||| |||||||| || || || ||| |||| Sbjct 18594036 GATGGCCGTACGCTTGCCGATTACAATATCCAGAAGGAGTCAACACTACACTTGGT 18593981 >seq20 Length=30099736 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||| ||| | || || || || || | ||||||||||| || ||||| ||| Sbjct 3387158 GATAAAGAGGGTATCCCACCGGACCAGCAGAGGTTGATCTTTGCGGGAAAGCAACTTGAA 3387099 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| || || |||| |||||||| || |||||||| ||||| |||||| ||||| || Sbjct 3387098 GATGGCAGGACATTGGCTGATTACAACATCCAGAAGGAGTCTACACTTCACTTGGTGCTA 3387039 Query 29175 CGATTACGAGGAGG 29188 | | || ||||| Sbjct 3387038 AGGCTTCGTGGAGG 3387025 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||| | || |||||| ||||| ||||||||||| || || || || ||| Sbjct 5698155 GATAAGGAAGGTATCCCTCCAGATCAGCAAAGGCTTATCTTTGCCGGTAAGCAGCTAGAA 5698214 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| | || |||| || ||||| ||||||||||| ||||| ||||| Sbjct 5698215 GATGGCCGTACCTTGGCTGACTACAACATTCAGAAGGAGTCTACGCTTCA 5698264 >seq12 Length=33044737 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| || ||||||||||| ||||| || || || | | Sbjct 24357679 ATGCAGATTTTTGTCAAGACTTTGACGGGCAAGACCATCACTCTAGAGGTCGAGAGCTCT 24357620 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | || | ||| || ||| || |||||||| | || || || Sbjct 24357619 GATACGATTGACAATGTGAAGGCCAAGATTCAAGACAAAGAAGGGATCCCACCGGACCAG 24357560 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||||| |||||||| || |||||||| |||||| ||| | || ||||||||| Sbjct 24357559 CAGAGACTAATCTTTGCCGGAAAACAACTCGAAGATGGTCGCACTTTAGCGGATTACAAT 24357500 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 |||||||| || || ||||||||| Sbjct 24357499 ATTCAGAAAGAGTCAACTCTTCAC 24357476 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || |||||| | || ||||| ||||| ||||||||||| || || || || ||| Sbjct 2892105 GACAAGGAAGGTATCCCTCCGGATCAGCAAAGGCTTATCTTTGCCGGTAAGCAGCTAGAA 2892046 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 || || || |||| || ||||| || |||||||| |||||||||||| |||| Sbjct 2892045 GACGGCAGGACCTTGGCTGACTACAACATCCAGAAGGAGTCTACTCTTCACTTGGT 2891990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428141740521860