Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq13 86.0 5e-12 seq11 84.2 2e-11 seq10 84.2 2e-11 >seq13 Length=24101694 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || ||||| || || |||||||| || ||| | | Sbjct 3264880 ATGCAAATCTTCGTCAAGACGTTGACCGGAAAGACCATTACTTTGGAGGTGGAGAGCTCT 3264821 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || |||| ||||| || || || ||| | || ||| || Sbjct 3264820 GACACCATCGACAATGTCAAAGCTAAAATCCAAGACAAGGAGGGTATCCCACCAGACCAG 3264761 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | ||||| || || || ||| | ||||| || ||| |||| || ||||| Sbjct 3264760 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGACGGCAGGACTTTGGCTGACTACAAC 3264701 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| ||||| |||||||||||| |||| || || | || ||||| Sbjct 3264700 ATTCAGAAGGAGTCTACTCTTCACTTGGTCTTGCGTCTCCGTGGAGG 3264654 >seq11 Length=49703607 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| ||||| |||| || ||||||||||| ||||| || || || | | Sbjct 21795561 ATGCAGATATTTGTCAAGACTTTGACGGGCAAGACCATCACTCTAGAGGTCGAGAGCTCT 21795502 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | || | ||| || ||| || |||||||| | || || || Sbjct 21795501 GATACGATTGACAATGTGAAGGCCAAGATTCAAGACAAAGAAGGGATCCCACCGGACCAG 21795442 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||||| |||||||| || |||||| | |||||| ||| | || ||||||||| Sbjct 21795441 CAGAGACTAATCTTTGCCGGAAAACAACTCGAAGATGGTCGCACTTTAGCGGATTACAAT 21795382 Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238 ||||| || || || ||||||||| Sbjct 21795381 ATTCAGAAAGAGTCAACTCTTCAC 21795358 >seq10 Length=25316904 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| ||||| |||| || ||||||||||| ||||| || || || | | Sbjct 18593505 ATGCAGATATTTGTCAAGACTTTGACGGGCAAGACCATCACTCTAGAGGTCGAGAGCTCT 18593446 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | || | ||| || ||| || |||||||| | || || || Sbjct 18593445 GATACGATTGACAATGTGAAGGCCAAGATTCAAGACAAAGAAGGGATCCCACCGGACCAG 18593386 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||||| |||||||| || |||||| | |||||| ||| | || ||||||||| Sbjct 18593385 CAGAGACTAATCTTTGCTGGAAAACAACTCGAAGATGGTCGCACTTTAGCGGATTACAAT 18593326 Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238 ||||| || || || ||||||||| Sbjct 18593325 ATTCAGAAAGAGTCAACTCTTCAC 18593302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410610494921768