Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 seq19 95.1 8e-15 seq15 84.2 2e-11 >seq1 Length=23241285 Score = 100 bits (110), Expect = 2e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 97072 TGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATC 97131 |||||||| |||| | || ||||| || |||||||| | || || || |||| | Sbjct 16357660 TGAGCATCCCCTATAACATGGATAAAATCACCAGGAACAAGATTGCACACGTGAGCGAGC 16357601 Query 97132 ATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCT 97191 || ||||| | ||||| ||| ||||||||||| ||||| || || ||||| || ||| Sbjct 16357600 ATGCAAGTAAGAAGAGAGTAGGACGCAATGTTAAACGGCACACCAAGGCCCATGTCTGCT 16357541 Query 97192 GATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTG 97241 || | ||||| | |||||||| || | ||||| |||||| ||||| Sbjct 16357540 GAACGCTGATACATTTGACAGGAGAGTTCCCCATCTGCCACATAGAACTG 16357491 >seq19 Length=26736940 Score = 95.1 bits (104), Expect = 8e-15 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 97072 TGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATC 97131 |||||||| |||| | || ||||| || |||||||| | || || || |||| | Sbjct 22319632 TGAGCATCCCCTATAACATGGATAAAATCACCAGGAACAAGATTGCACACGTGAGCGAGC 22319691 Query 97132 ATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCT 97191 || ||||| | ||||| ||| ||||||||||| ||||| || |||||||| || ||| Sbjct 22319692 ATGCAAGTAAGAAGAGAGTAGGACGCAATGTTAAACGGCACACCAAGTCCCATGTCTGCT 22319751 Query 97192 GATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTG 97241 || | ||||| | ||||| || || | || || |||||| ||||| Sbjct 22319752 GAACGCTGATACATTTGACACGAGAGTTCCCCTTCTGCCACATAGAACTG 22319801 >seq15 Length=30521352 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 97072 TGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATC 97131 |||||||| |||| | || ||||| || |||||||| | || || | |||| | Sbjct 24339619 TGAGCATCCCCTATAACATGGATAAAATCACCAGGAACAAGATTGCACACGCGAGCGAGC 24339678 Query 97132 ATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCT 97191 || ||||| | ||||| ||| ||||||||||| ||||| || || ||||| || ||| Sbjct 24339679 ATGCAAGTAAGAAGAGAGTAGGACGCAATGTTAAAGGGCACACCAAGGCCCATGTCTGCT 24339738 Query 97192 GATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACT 97240 || | ||||| | ||||| || || | || || |||||| |||| Sbjct 24339739 GAACGCTGATACATTTGACACGAGAGTTCCCCTTCTGCCACATAGAACT 24339787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346626726086840