Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq20 89.7 8e-13 seq8 84.2 3e-11 >seq20 Length=30099736 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | | ||||| || | || |||||||| || || ||||||| Sbjct 14739660 CCACCTCTTAAACGAAGAACCAAGTGAAGTGTTGATTCTTTCTGGATGTTGTAATCTGCC 14739601 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| |||| ||||| |||||||| |||||||||||||||||||||||| Sbjct 14739600 AAGGTACGACCATCCTCTAGCTGTTTACCAGCAAAGATCAATCTTTGCTGATCCGGAGGA 14739541 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 14739540 ATCCCTTCCTTGTCCTG 14739524 >seq8 Length=27720346 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | | ||||| || | ||| ||||| || ||||| ||||||| Sbjct 26613674 TTCCACCACGAAGACGAAGAACCAAGTGAAGAGTTGATTCCTTCTGGATATTGTAATCTG 26613615 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||| || | | ||| || | || |||||||| || || | ||| ||||||||||| | Sbjct 26613614 CAAGTGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGCTGATCCGGGG 26613555 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||| || || ||||| Sbjct 26613554 GAATTCCCTCCTTGTCTTG 26613536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743180548695040