Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq10 93.3 3e-14 seq11 87.8 1e-12 seq12 84.2 2e-11 >seq10 Length=25316904 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 20288 ATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAACC 20347 ||||| ||| |||||| | ||||| | | |||| ||||| || || | || | Sbjct 2742188 ATTATACTGGCCAAGGATTTGATCAGCTCTTAGATGTAATTAACAAGATCAAGAATAATC 2742247 Query 20348 CAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCTT 20407 | | || || |||| ||| | | ||| ||||| || ||| || || ||||| Sbjct 2742248 CTGATGATCGACGAATCATTATGTCCGCTTGGAATCCTCCTGATCTGGAGTTGATGGCAC 2742307 Query 20408 TGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAA 20466 | |||||||| || ||| | ||| || ||||| ||||| ||| ||| | || |||||| Sbjct 2742308 TTCCTCCATGCCACATGTT-TGCACAGTTTTATGTTGCAAATGGAGAACTTTCATGTCAA 2742366 Query 20467 ATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGC 20516 |||||||| || || || |||||||| || |||| || || || ||||| Sbjct 2742367 ATGTATCAGCGCTCAGCCGATATGGGTCTCCGTGTACCGTTTAACATTGC 2742416 >seq11 Length=49703607 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 20288 ATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAACC 20347 ||||| ||| |||||| | ||||| | | |||| ||||| || || | || | Sbjct 3082970 ATTATACTGGCCAAGGATTTGATCAGCTCTTAGATGTAATTAACAAGATCAAGAATAATC 3083029 Query 20348 CAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCTT 20407 | | || || |||| || | | || ||||| || ||| || || ||||| Sbjct 3083030 CTGATGATCGACGAATCATAATGTCGGCTTGGAATCCTCCTGATCTGAAGTTGATGGCAC 3083089 Query 20408 TGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAA 20466 | |||||||| || ||| | ||| || ||||| ||||| ||| ||| | || |||||| Sbjct 3083090 TTCCTCCATGCCACATGTT-TGCACAGTTTTATGTTGCAAATGGAGAACTTTCATGTCAA 3083148 Query 20467 ATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGC 20516 |||||||| || || || |||||||| || ||||| || || || ||||| Sbjct 3083149 ATGTATCAGCGCTCAGCCGATATGGGTCTCGGTGTACCGTTTAACATTGC 3083198 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 20288 ATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAACC 20347 ||||| ||| |||||| | ||||| | | |||| ||||| || || | || | Sbjct 3083534 ATTATACTGGCCAAGGATTTGATCAGCTCTTAGATGTAATTAACAAGATCAAGAATAATC 3083593 Query 20348 CAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCTT 20407 | | || || |||| || | | || ||||| || ||| || || ||||| Sbjct 3083594 CTGATGATCGACGAATCATAATGTCGGCTTGGAATCCTCCTGATCTGAAGTTGATGGCAC 3083653 Query 20408 TGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAA 20466 | |||||||| || ||| | ||| || ||||| ||||| ||| ||| | || |||||| Sbjct 3083654 TTCCTCCATGCCACATGTT-TGCACAGTTTTATGTTGCAAATGGAGAACTTTCATGTCAA 3083712 Query 20467 ATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGC 20516 |||||||| || || || |||||||| || ||||| || || || ||||| Sbjct 3083713 ATGTATCAGCGCTCAGCCGATATGGGTCTCGGTGTACCGTTTAACATTGC 3083762 >seq12 Length=33044737 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 20288 ATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAACC 20347 ||||| ||| |||||| | ||||| | | |||| ||||| || || | || | Sbjct 2862410 ATTATACTGGCCAAGGATTTGATCAGCTCTTAGATGTAATTAACAAGATCAAGAATAATC 2862469 Query 20348 CAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCTT 20407 | | || || |||| || | | || ||||| || ||| || || ||||| Sbjct 2862470 CTGATGATCGACGAATCATAATGTCGGCTTGGAATCCTCCTGATCTGAAGTTGATGGCAC 2862529 Query 20408 TGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAA 20466 | |||||||| | ||| | ||| || ||||| ||||| ||| ||| | || |||||| Sbjct 2862530 TTCCTCCATGCGACATGTT-TGCACAGTTTTATGTTGCAAATGGAGAACTTTCATGTCAA 2862588 Query 20467 ATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGC 20516 |||||||| || || || |||||||| || ||||| || || || ||||| Sbjct 2862589 ATGTATCAGCGCTCAGCCGATATGGGGCTCGGTGTACCGTTTAACATTGC 2862638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399002961573340