Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq16 95.1 3e-14 seq9 95.1 3e-14 seq7 89.7 1e-12 >seq16 Length=29110212 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 ||||| || ||||||||||||| || ||||| || |||| ||| || ||| | ||| | Sbjct 22277109 GATTTTGAATACGATTTCTTTGGATTTAAAACTCTTGAGAGATCATACCTCTTAAAAGTC 22277168 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 || || || | || ||| | ||| |||||| ||||| | || ||||| || |||||| Sbjct 22277169 GAAGGGAAAGTTGTTGAAAGGCCTCAACACATGCTGATGAGGGTAGCTGTTGGCATTCAC 22277228 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 |||||||| || || || | || | || ||| ||| | | | ||| | || Sbjct 22277229 AAGGATGATATTGATTCCGCGATCCAAACTTACCATTTGATGTCTCAGAGATGGTTCACT 22277288 Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| | || || |||||||| || || || Sbjct 22277289 CATGCATCTCCTACACTCTTCAATGCAGGAAC 22277320 >seq9 Length=38094978 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 ||||| || ||||||||||||| || ||||| || |||| ||| || ||| | ||| | Sbjct 32304795 GATTTTGAATACGATTTCTTTGGATTTAAAACTCTTGAGAGATCATACCTCTTAAAAGTC 32304854 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 || || || | || ||| | ||| |||||| ||||| | || ||||| || |||||| Sbjct 32304855 GAAGGGAAAGTTGTTGAAAGGCCTCAACACATGCTGATGAGGGTAGCTGTTGGCATTCAC 32304914 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 |||||||| || || || | || | || ||| ||| | | | ||| | || Sbjct 32304915 AAGGATGATATTGATTCCGCGATCCAAACTTACCATTTGATGTCTCAGAGATGGTTCACT 32304974 Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| | || || |||||||| || || || Sbjct 32304975 CATGCATCTCCTACACTCTTCAATGCAGGAAC 32305006 >seq7 Length=33617777 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 ||||| || ||||||||||||| || ||||| || |||| ||| || ||| | | | | Sbjct 26388975 GATTTTGAATACGATTTCTTTGGATTTAAAACTCTTGAGAGATCATACCTCTTAAGAGTC 26389034 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 || || || | || ||| | ||| |||||| ||||| | || ||||| || |||||| Sbjct 26389035 GAAGGGAAAGTTGTTGAAAGGCCTCAACACATGCTGATGAGGGTAGCTGTTGGCATTCAC 26389094 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 |||||||| || || || | || | || ||| ||| | | | ||| | || Sbjct 26389095 AAGGATGATATTGATTCCGCGATCCAAACTTACCATTTGATGTCTCAGAGATGGTTCACT 26389154 Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| | || || |||||||| || || || Sbjct 26389155 CATGCATCTCCTACACTCTTCAATGCAGGAAC 26389186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073254450998016