Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq4 89.7 5e-13 >seq4 Length=30110606 Score = 89.7 bits (98), Expect = 5e-13 Identities = 232/347 (67%), Gaps = 15/347 (4%) Strand=Plus/Plus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 ||||| || || || || || || || || | || ||||||||||| || || | Sbjct 6029438 CACGCGAAGTCGCAGTGTAGACCTTCGTCACGCGAGATCAGTTCGTTTGAGAAAGTAAGG 6029497 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAA 14322 || ||||| | ||||||||| || | ||| || |||| ||| ||| |||||| ||||| Sbjct 6029498 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATTG-AGCAGAAGCTTCCGGAGAAGAA 6029556 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT---TTTGTT 14379 || || || || ||| || ||||| | |||||| | ||| | | | | || Sbjct 6029557 GATACCTTCGACGCAAGCGAAAGCTATGATTCGTTC----AGCGAAGGTCTGAGATCCTT 6029612 Query 14380 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14439 || |||||||| | ||||| | || ||| || | || || |||||||| || Sbjct 6029613 CG--ATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGGATGGTTTCAATCGC 6029670 Query 14440 ATTAAATAAATGTTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 14497 || | ||| || |||||| | || ||| ||||| ||||| | || | || Sbjct 6029671 GCGGAAGAGATGGTCTCTCTCTTTGTTGTCTTTG--ATGTAAGTATCGAGGAGGAGACTG 6029728 Query 14498 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA 14544 ||||| || ||||| ||||| || || || ||||| || || || || Sbjct 6029729 TACATCTCGGAGTGGATGTTCTCAATCGCGATCTGGAATCCGTAGAA 6029775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482121236944160