Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq20 104 2e-17 seq13 98.7 8e-16 seq8 96.9 3e-15 seq10 89.7 4e-13 seq2 84.2 2e-11 seq12 82.4 6e-11 seq11 82.4 6e-11 >seq20 Length=30099736 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| |||||||||||||| ||||||||||| || |||| || | |||| Sbjct 11036878 AGAACCAAGTGGAGTGTTGATTCTTTCTGAATGTTGTAATCAGCCAAGGTGCGGCCATCT 11036937 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||| || ||| |||| | |||||| |||||| || | |||||||| || Sbjct 11036938 TCAAGCTGTTTACCGGCAAAGATCAATCTTTGCTGATCCGGAGGAATACCTTCCTTGTCC 11036997 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | | | |||||| | |||| |||| |||||| | Sbjct 11036998 TGGATCTTAGCCTTGACATTGTCGATGGTGTCAGAGCTCTCGACCTCAAGAGTGATGGTC 11037057 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || | |||||| || ||||||||||| Sbjct 11037058 TTACCAGTGAGTGTTTTCACGAAAATTTGCAT 11037089 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| |||||||||||||||||| || |||||||| || |||| || || ||| Sbjct 14739646 AAGAACCAAGTGAAGTGTTGATTCTTTCTGGATGTTGTAATCTGCCAAGGTACGACCATC 14739587 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 || | ||||| || ||| |||| | |||||| |||||| || | |||||||| || Sbjct 14739586 CTCTAGCTGTTTACCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATCCCTTCCTTGTC 14739527 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | ||| || | | | |||||| | ||| || | || ||| | Sbjct 14739526 CTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTAATGGT 14739467 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | |||||| || ||||||||||| Sbjct 14739466 CTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 14739434 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| |||| |||||| ||||| || || || |||||||| || || Sbjct 11035950 TCCGCCACGAAGACGAAGAACCAAGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCTGC 11036009 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || || ||| || | ||||| || || |||| ||||| ||||| || || Sbjct 11036010 AAGAGTCCGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGG 11036069 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGG 18276 | |||||||| || ||| | | |||| | | | ||| |||||| | ||| Sbjct 11036070 GATCCCTTCCTTGTCCTGAATCT-TAGCTTTAACGTTATCAATAGTGTCTGAGCTCTCCA 11036128 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || ||| | |||||||| | || || |||||||||||||| Sbjct 11036129 CTTCCAAAGTAATGGTCTTGCCGGTAAGGGTCTTCACAAAAATTTGCAT 11036177 >seq13 Length=24101694 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||||||||| ||||||||||| || |||| || | |||| Sbjct 9157464 AGAACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAATCAGCCAAGGTGCGGCCATCT 9157523 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||| || || |||| | |||||| |||||| || | ||||||||| || Sbjct 9157524 TCGAGCTGTTTACCGGCGAAGATCAATCTTTGCTGATCCGGAGGAATGCCTTCCTTGTCC 9157583 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | ||| || | | | ||||| | |||| |||| ||||||| | Sbjct 9157584 TGGATCTTTGCCTTAACATTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATGGTC 9157643 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || | |||||| || ||||||||||| Sbjct 9157644 TTACCAGTGAGTGTTTTCACGAAAATTTGCAT 9157675 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || || || |||| ||||||||| || || || |||||||||||||| ||| Sbjct 3264426 CCACCACGAAGCCTTAGCACCAAGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCAGCC 3264485 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || ||| || | |||||||| || |||| || | ||| || ||| || Sbjct 3264486 AATGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGTTGCTGGTCCGGAGGG 3264545 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || |||| ||| || | ||| ||||| | ||| Sbjct 3264546 ATACCTTCCTTGTCCTGGATTTTAGCCTTCACATTGTCAATGGTGTCGGAGCTCTCAACC 3264605 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | ||||| || | || || || ||||| ||||| Sbjct 3264606 TCGAGGGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATCTGCAT 3264652 >seq8 Length=27720346 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||| || ||||||||||| || |||||||| || |||| || | ||| Sbjct 6052870 AAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGCCAAGGTGCGGCCATC 6052929 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||| | ||||| || ||| |||| | |||||| |||||| || | ||||||||| || Sbjct 6052930 TTCAAGCTGTTTACCGGCAAAGATCAATCTTTGCTGATCCGGAGGAATGCCTTCCTTGTC 6052989 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | ||| || | | | ||||| | |||| |||| ||||||| | Sbjct 6052990 CTGGATCTTAGCCTTAACATTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATGGT 6053049 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || | |||||| || ||||||||||| Sbjct 6053050 CTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 6053082 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| |||| |||||| || || || || || |||||||| || || Sbjct 8688604 TCCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCCGC 8688545 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || || ||| || | ||||| || || |||| ||||| ||||| ||| || Sbjct 8688544 AAGAGTCCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCCGGAGG 8688485 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||| | | |||||| | | | ||||| | ||| Sbjct 8688484 GATCCCTTCCTTATCCTGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTCTCTAC 8688425 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | || || ||||| ||||| ||||| |||||||| Sbjct 8688424 CTCCAAGGTGATAGTCTTCCCTGTCAAAGTTTTCACAAAGATTTGCAT 8688377 >seq10 Length=25316904 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170 ||||| |||| ||| |||||||| || || || || ||||| ||||| | || | | Sbjct 18593975 CTAAGAACCAAGTGTAGTGTTGACTCCTTCTGGATATTGTAATCGGCAAGCGTACGGCCA 18594034 Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 ||||| | |||||| || ||| |||||||||| ||||| ||| || | |||||||||| Sbjct 18594035 TCTTCAAGTTGTTTACCGGCAAAGATAAGTCTCTGTTGGTCCGGAGGGATGCCTTCCTTA 18594094 Query 18231 TC 18232 || Sbjct 18594095 TC 18594096 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| || || ||||| ||||| || ||||| || || || | ||| || ||| Sbjct 18593749 AAGAACCAAATGCAGAGTTGACTCTTTCTGGATGTTATAATCTGCTAGGGTTCGACCATC 18593808 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 || | ||| ||||| || |||||||||| ||||| ||| || | |||||||| || Sbjct 18593809 CTCAAGTTGCTTGCCAGCGAAGATAAGTCTCTGTTGGTCCGGAGGGATTCCTTCCTTGTC 18593868 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | |||||| | ||| |||||| | || ||| | || || | Sbjct 18593869 TTGGATCTTCGCCTTGACATTGTCAATGGTGTCAGAGCTTTCAACTTCTAGAGTAATAGT 18593928 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| ||||| | ||||||||||| |||||||| Sbjct 18593929 TTTTCCGGTGAGGGTTTTTACAAATATTTGCAT 18593961 >seq2 Length=29139806 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || || || |||| ||| || || ||||| || || |||||||| |||||| Sbjct 2807246 CCACCACGAAGCCTGAGGACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGCC 2807305 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| ||||| || || || || ||||||| || || |||||| || Sbjct 2807306 AAGGTACGACCATCCTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGA 2807365 Query 18219 ACGCCTTCCTTATC 18232 | |||||||||||| Sbjct 2807366 ATGCCTTCCTTATC 2807379 >seq12 Length=33044737 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170 ||||| |||| ||| |||||||| || ||||| || ||||| || || | || || | Sbjct 24358149 CTAAGAACCAAGTGGAGTGTTGACTCCTTTTGGATATTGTAATCAGCAAGCGTACGACCA 24358208 Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 || || | ||||| || ||| |||||||||| || || ||| || | |||||||||| Sbjct 24358209 TCCTCAAGCTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCCGGAGGGATGCCTTCCTTA 24358268 Query 18231 TCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 || || | |||||| | | | ||||| | || |||| ||| ||| Sbjct 24358269 TCTTGGATCTTGGCCTTGACATTGTCGATCGTGTCGGAGCTTTCAACCTCAAGGGTTATG 24358328 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||||| || | || |||||||| || ||||| Sbjct 24358329 GTCTTGCCAGTAAGAGTCTTTACAAAGATCTGCAT 24358363 >seq11 Length=49703607 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| || || ||||| |||| || ||||| || || || | ||| || ||| Sbjct 21795805 AAGAACCAAATGCAGAGTTGACCCTTTCTGGATGTTATAATCTGCTAAGGTTCGACCATC 21795864 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 || | ||| ||||| || |||||||||| ||||| ||| || | |||||||| || Sbjct 21795865 CTCAAGTTGCTTGCCAGCGAAGATAAGTCTCTGTTGGTCCGGAGGGATTCCTTCCTTGTC 21795924 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | |||||| | ||| |||||| | || ||| | || ||| | Sbjct 21795925 TTGGATCTTCGCCTTGACATTGTCAATGGTGTCAGAGCTTTCAACTTCTAGAGTAATGGT 21795984 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| ||||| | ||||||||||| |||||||| Sbjct 21795985 TTTTCCGGTGAGGGTTTTTACAAATATTTGCAT 21796017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379171959434940