Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq14 87.8 2e-12 seq3 87.8 2e-12 >seq14 Length=31758599 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| |||||| |||| || || |||||||| | || || || || Sbjct 11737618 ATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACGATAACACTAGAGGTTGAGTCATCA 11737677 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | ||| || | || || | || ||||| | || || ||| Sbjct 11737678 GACACGATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGGATCCCACCGGATCAG 11737737 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || ||| | || | ||| || ||||| |||||||| | || | |||||||| | Sbjct 11737738 CAGCGTCTGATCTTTGCCGGGAAACAGCTGGAAGACGGGAGAACGCTAGCCGATTACAAC 11737797 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || ||||||||| | ||||||||||| ||| | || || | |||||| Sbjct 11737798 ATCCAGAAAGAGTCGACGCTTCATTTGGTGCTGCGTCTGAGGGGAGGT 11737845 >seq3 Length=28500605 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| |||||| |||| || || |||||||| | || || || || Sbjct 10831702 ATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACGATAACACTAGAGGTTGAGTCATCA 10831761 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | ||| || | || || | || ||||| | || || ||| Sbjct 10831762 GACACGATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGGATCCCACCGGATCAG 10831821 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || ||| | || | ||| || ||||| |||||||| | || | |||||||| | Sbjct 10831822 CAGCGTCTGATCTTTGCCGGGAAACAGCTGGAAGACGGGAGAACGCTAGCCGATTACAAC 10831881 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || ||||||||| | ||||||||||| ||| | || || | |||||| Sbjct 10831882 ATCCAGAAAGAGTCGACGCTTCATTTGGTGCTGCGTCTGAGGGGAGGT 10831929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418114290247040