Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq12 132 1e-25 seq11 132 1e-25 seq10 127 4e-24 >seq12 Length=33044737 Score = 132 bits (146), Expect = 1e-25 Identities = 150/198 (76%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| ||||| |||||| || | || || ||| |||| ||||||||| ||||| | Sbjct 2862461 AGAATAATCCTGATGATCGACGAATCATAATGTCGGCTTGGAATCCTCCTGATCTGAAGT 2862520 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| |||||||||||| ||||| ||| || |||||||| || ||||||||| | | Sbjct 2862521 TGATGGCACTTCCTCCATGCGACATGTTTGCACAGTTTTATGTTGCAAATGGAGAACTTT 2862580 Query 35637 CGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 | || || |||||||||| ||| || ||| ||| | || || || || || ||||| Sbjct 2862581 CATGTCAAATGTATCAGCGCTCAGCCGATATG--GGGCTCGGTGTACCGTTTAACATTGC 2862638 Query 35695 ATCATACTCTCTTCTGAC 35712 |||||||| ||||| || Sbjct 2862639 CTCATACTCCCTTCTCAC 2862656 >seq11 Length=49703607 Score = 132 bits (146), Expect = 1e-25 Identities = 150/198 (76%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| ||||| |||||| || | || || ||| |||| ||||||||| ||||| | Sbjct 3083021 AGAATAATCCTGATGATCGACGAATCATAATGTCGGCTTGGAATCCTCCTGATCTGAAGT 3083080 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| |||||||||||||||||| ||| || |||||||| || ||||||||| | | Sbjct 3083081 TGATGGCACTTCCTCCATGCCACATGTTTGCACAGTTTTATGTTGCAAATGGAGAACTTT 3083140 Query 35637 CGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 | || || |||||||||| ||| || ||| || | || || || || || ||||| Sbjct 3083141 CATGTCAAATGTATCAGCGCTCAGCCGATATG--GGTCTCGGTGTACCGTTTAACATTGC 3083198 Query 35695 ATCATACTCTCTTCTGAC 35712 |||||||| ||||| || Sbjct 3083199 CTCATACTCCCTTCTTAC 3083216 Score = 132 bits (146), Expect = 1e-25 Identities = 150/198 (76%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| ||||| |||||| || | || || ||| |||| ||||||||| ||||| | Sbjct 3083585 AGAATAATCCTGATGATCGACGAATCATAATGTCGGCTTGGAATCCTCCTGATCTGAAGT 3083644 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| |||||||||||||||||| ||| || |||||||| || ||||||||| | | Sbjct 3083645 TGATGGCACTTCCTCCATGCCACATGTTTGCACAGTTTTATGTTGCAAATGGAGAACTTT 3083704 Query 35637 CGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 | || || |||||||||| ||| || ||| || | || || || || || ||||| Sbjct 3083705 CATGTCAAATGTATCAGCGCTCAGCCGATATG--GGTCTCGGTGTACCGTTTAACATTGC 3083762 Query 35695 ATCATACTCTCTTCTGAC 35712 |||||||| ||||| || Sbjct 3083763 CTCATACTCCCTTCTTAC 3083780 >seq10 Length=25316904 Score = 127 bits (140), Expect = 4e-24 Identities = 149/198 (75%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| ||||| |||||| || | || |||||| | || ||||||||| ||||| | Sbjct 2742239 AGAATAATCCTGATGATCGACGAATCATTATGTCCGCTTGGAATCCTCCTGATCTGGAGT 2742298 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| |||||||||||||||||| ||| || |||||||| || ||||||||| | | Sbjct 2742299 TGATGGCACTTCCTCCATGCCACATGTTTGCACAGTTTTATGTTGCAAATGGAGAACTTT 2742358 Query 35637 CGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 | || || |||||||||| ||| || ||| || | | || || || || ||||| Sbjct 2742359 CATGTCAAATGTATCAGCGCTCAGCCGATATG--GGTCTCCGTGTACCGTTTAACATTGC 2742416 Query 35695 ATCATACTCTCTTCTGAC 35712 |||||||| ||||| || Sbjct 2742417 CTCATACTCCCTTCTTAC 2742434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989112187377460