Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4 168 8e-37 seq9 161 1e-34 seq10 109 7e-19 seq12 100 4e-16 seq16 98.7 1e-15 seq11 96.9 4e-15 seq7 95.1 2e-14 >seq4 Length=30110606 Score = 168 bits (186), Expect = 8e-37 Identities = 405/604 (67%), Gaps = 9/604 (1%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| |||||||| ||||| ||||| | || | |||||| || || || || Sbjct 6029438 CACGCGAAGTCGCAGTGTAGACCTTCGTCACGCGAGATCAGTTCGTTTGAGAAAGTAAGG 6029497 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || || || |||||||| || || || ||| |||||| |||||| Sbjct 6029498 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATTGAGCAGAAGCTTCCGGAGAAGAAG 6029557 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGCTGTCATGTAT 33760 || ||||| || ||| || || || | || || | | | | | | | | || Sbjct 6029558 ATACCTTCGACGCAAGCGAAAGCTATGATTCGTTCAGCGAAGGTCTGAGATC-CTTCGAT 6029616 Query 33761 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 ||| || ||||| | || ||||| || ||||| || ||||| || || || Sbjct 6029617 CCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCGGAA 6029676 Query 33821 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33880 ||||| || | | || || | ||||| | |||||||||| | ||||| ||||| || Sbjct 6029677 GAGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTATCGAGGAGGAGACTGTACATCTC 6029736 Query 33881 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 33940 || || ||||| ||||| || ||||| ||||||||||| | ||||| | | || Sbjct 6029737 GGAGTGGATGTTCTCAATCGCGATCTGGAATCCGTAGAAGGCACGCGCCTCCGAGACTTG 6029796 Query 33941 CACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAA 33999 || || | ||| || ||| || | ||| || ||| ||||| || || |||| Sbjct 6029797 GACATC-GGACATGAAACGTGAGGCGAGATTCTCTAGCACGATTCCGTCTGACGCGGCAA 6029855 Query 34000 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAG---TTTATTCCAA 34055 | || || | || ||||| || || | |||| | | || | || || | ||| Sbjct 6029856 AGAAGGCGAGGACGTGTTTGATGAAGTGGCGTTCGCCGTCGT-TGAGGCTGTTCTCCCAG 6029914 Query 34056 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115 || | | |||| ||||| ||| |||||||| | ||||| || ||||| || || || Sbjct 6029915 TCGCGGTTGTCTTGAGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTC 6029974 Query 34116 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 || ||||| | |||||| | | || ||||||||||| ||| ||||| | ||| || Sbjct 6029975 TTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGGGGTT 6030034 Query 34176 GGTG 34179 |||| Sbjct 6030035 GGTG 6030038 >seq9 Length=38094978 Score = 161 bits (178), Expect = 1e-34 Identities = 405/607 (67%), Gaps = 15/607 (2%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| |||||||| ||||| ||||| | || | |||||| || || || || Sbjct 5073822 CAAGCGAAGTCGCAGTGTAGACCTTCGTCACGCGAGATCAGTTCGTTTGAGAAAGTAAGG 5073881 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || || || |||||||| || || || ||| |||||| |||||| Sbjct 5073882 CCAGGCATGAGACCTCGTTTCTTAAGCCAGAAGATTGAGCAGAAGCTTCCGGAGAAGAAG 5073941 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT- 33758 || ||||| || ||| || || || | || || | | | || || || Sbjct 5073942 ATACCTTCGACGCAAGCGAAAGCGATGATTCGTTCAGCGAA----GGTTTGAGATCCGTC 5073997 Query 33759 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| | |||||| | ||| ||||| || ||||| || ||||| || || Sbjct 5073998 GATCCATGTCATAGCCCACTGGGCTTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCG 5074057 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 ||||||| || | | || ||| | ||||| | |||||||||| | ||||| ||||| Sbjct 5074058 GAAGAGATGGTCTCTCTCTTTATTGTCTTTGATGTAAGTATCGAGGAGGAGACTGTACAT 5074117 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 || || || || || ||||| || ||||| |||||||||||| | ||||| | | Sbjct 5074118 CTCGGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCCTCCGAGAC 5074177 Query 33938 CTGCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 || || || | ||| || || || | ||| || ||| ||||| || || | Sbjct 5074178 TTGGACATC-GGACATGAAACGGGAAGCGAGATTCTCTAACACGATTCCGTCTGACGCGG 5074236 Query 33997 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAG---TTTATTC 34052 | || || || | || ||||| || || | |||| | | || | || || | | Sbjct 5074237 CGAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGTTCGCCGTCGT-TGAGGCTGTTTTCC 5074295 Query 34053 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 34112 || || | | |||| |||| ||| |||||||| | ||||| || ||||| || || Sbjct 5074296 CAGTCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCAGTCCAGAAGGATGCTTCGGCT 5074355 Query 34113 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 34172 || || ||||| | |||||| | | || ||||||||||| ||| ||||| | ||| Sbjct 5074356 TTCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGGG 5074415 Query 34173 TTTGGTG 34179 |||||| Sbjct 5074416 GTTGGTG 5074422 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| ||||| | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 32305348 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 32305289 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| | ||||| || || ||||| | |||| | |||||||||||| |||||| Sbjct 32305288 ATTAGATGTTCCATTTGTGCCACGAATATAACTTCCAGTTGCACGAATATTATGAATTGA 32305229 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| || ||||| || ||| || | || || ||| | || ||||| || Sbjct 32305228 AACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTTTCATATAT 32305169 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 ||| || ||||||||||| ||||| | ||||| ||||| Sbjct 32305168 GCCGTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 32305127 >seq10 Length=25316904 Score = 109 bits (120), Expect = 7e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | || | ||| || | ||| |||| | || |||||||| |||||| Sbjct 542226 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAAAACCCGCAGCATTGGAACAATACC 542167 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| ||||| || || || || | |||| | ||||| || || || ||| Sbjct 542166 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 542107 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 || ||| || |||||||| | ||| || | || || ||| ||||||||||| || Sbjct 542106 TACACCAATACCCCCTGCTAATTTGCTTATAACAGCACACTCTTTCAACGTGTCATATAT 542047 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 ||||| ||||||||||| ||||| || ||||| |||||| Sbjct 542046 TCCTTCGATGCTATCATCCTTCATGCAAACCAGAAAGCAGCTA 542004 >seq12 Length=33044737 Score = 100 bits (110), Expect = 4e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | |||| ||| || | ||| | || | || |||||||| |||||| Sbjct 564399 TCCTCCTTGGTCAACATATCGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 564340 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| ||||| || || || || | |||| | ||||| || || || ||| Sbjct 564339 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 564280 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 || ||| || ||||| || | ||| || | || || ||| ||||||||||| || Sbjct 564279 TACACCAATACCCCCAGCTAATTTGCTTATAACAGCACACTCTTTCAACGTGTCATATAT 564220 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 || || ||||||||||| ||||| || ||||| |||||| Sbjct 564219 TCCCTCGATGCTATCATCCTTCATGCAAATCAGAAAGCAGCTA 564177 >seq16 Length=29110212 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| ||||| | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 22277660 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 22277601 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| | ||||| || || || || | |||| | |||||||||||| |||||| Sbjct 22277600 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAATTGA 22277541 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| || ||||| || ||| || | || || ||| | || ||||| || Sbjct 22277540 AACACCAATACCCCCAGCTGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 22277481 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 ||| || ||||||||||| ||||| | ||||| ||||| Sbjct 22277480 GCCGTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 22277439 >seq11 Length=49703607 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | ||| | ||| || | ||| | || | || |||||||| |||||| Sbjct 646820 TCCTCCTTGGTCAACGTAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATACC 646761 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| ||||| || || || || | |||| | ||||| || || || ||| Sbjct 646760 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 646701 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 || ||| || || ||||| | ||| || | || || ||| ||||||||||| || Sbjct 646700 TACACCAATACCGCCTGCTAATTTGCTTATAACAGCACACTCTTTCAACGTGTCATAAAT 646641 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 || || ||||||||||| ||||| || | ||| |||||| Sbjct 646640 TCCCTCGATGCTATCATCCTTCATGCAAATCAAAAAGCAGCTA 646598 >seq7 Length=33617777 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| ||||| | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 26389526 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 26389467 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| | ||||| || || || || | |||| | ||||||||||| |||||| Sbjct 26389466 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTGTGAATTGA 26389407 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| || ||||| || ||| || | || || ||| | || ||||| || Sbjct 26389406 AACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 26389347 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 ||| || ||||||||||| ||||| | ||||| ||||| Sbjct 26389346 GCCGTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 26389305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629524640343360