Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq7 91.5 1e-13 seq16 87.8 2e-12 seq9 87.8 2e-12 >seq7 Length=33617777 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| ||| ||||| || || || | ||||||||||||||| |||||||| | | Sbjct 26389199 TTGAGGCCTTGGCGTTCCTGCATTGAAGAGTGTAGGAGATGCATGAGTGAACCATCTCTG 26389140 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| || |||| || | ||| |||||| | |||||| || | || Sbjct 26389139 AGACATCAAATGGTAAGTTTGGATCGCGGAATCAATATCATCCTTGTGAATGCCAACAGC 26389080 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTC 38549 ||||||||| ||||| ||||| || ||||| Sbjct 26389079 TACCCTCATCAGCATGTGTTGAGGCCTTTC 26389050 >seq16 Length=29110212 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| || ||||| || || || | ||||||||||||||| |||||||| | | Sbjct 22277333 TTGAGGCCTAGGCGTTCCTGCATTGAAGAGTGTAGGAGATGCATGAGTGAACCATCTCTG 22277274 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| || |||| || | ||| |||||| | |||||| || | || Sbjct 22277273 AGACATCAAATGGTAAGTTTGGATCGCGGAATCAATATCATCCTTGTGAATGCCAACAGC 22277214 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT--ATTATTCTGTTTAAGTAGA 38577 ||||||||| ||||| ||||| || ||||| | | ||| || || |||||| || Sbjct 22277213 TACCCTCATCAGCATGTGTTGAGGCCTTTCAACAACTTTCCCTTCGACT-TTTAAG-AGG 22277156 Query 38578 TACGATTTTTCTAATGTTTTTATTCCAAA 38606 || ||| | || | ||||| | |||||| Sbjct 22277155 TATGATCTCTCAAGAGTTTTAAATCCAAA 22277127 >seq9 Length=38094978 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| || ||||| || || || | ||||||||||||||| |||||||| | | Sbjct 32305019 TTGAGGCCTAGGCGTTCCTGCATTGAAGAGTGTAGGAGATGCATGAGTGAACCATCTCTG 32304960 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| || |||| || | ||| |||||| | |||||| || | || Sbjct 32304959 AGACATCAAATGGTAAGTTTGGATCGCGGAATCAATATCATCCTTGTGAATGCCAACAGC 32304900 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT--ATTATTCTGTTTAAGTAGA 38577 ||||||||| ||||| ||||| || ||||| | | ||| || || |||||| || Sbjct 32304899 TACCCTCATCAGCATGTGTTGAGGCCTTTCAACAACTTTCCCTTCGACT-TTTAAG-AGG 32304842 Query 38578 TACGATTTTTCTAATGTTTTTATTCCAAA 38606 || ||| | || | ||||| | |||||| Sbjct 32304841 TATGATCTCTCAAGAGTTTTAAATCCAAA 32304813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468306865689280