Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq9 116 5e-21 seq16 113 6e-20 seq7 107 3e-18 >seq9 Length=38094978 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| ||||| | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 32305348 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 32305289 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| ||||| ||||| || || ||||| |||||| |||||||||||||| |||||| Sbjct 32305288 ATTAGATGTTCCATTTGTGCCACGAATATAACTTCCAGTTGCACGAATATTATGAATTGA 32305229 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| || ||||| || ||| || | || || ||| | || ||||| || Sbjct 32305228 AACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTTTCATATAT 32305169 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 ||| || || |||||||| ||||| | ||||| ||||| Sbjct 32305168 GCCGTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 32305127 >seq16 Length=29110212 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| ||||| | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 22277660 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 22277601 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| ||||| ||||| || || || || |||||| |||||||||||||| |||||| Sbjct 22277600 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAATTGA 22277541 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| || ||||| || ||| || | || || ||| | || ||||| || Sbjct 22277540 AACACCAATACCCCCAGCTGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 22277481 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 ||| || || |||||||| ||||| | ||||| ||||| Sbjct 22277480 GCCGTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 22277439 >seq7 Length=33617777 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| ||||| | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 26389526 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 26389467 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| ||||| ||||| || || || || |||||| ||||||||||||| |||||| Sbjct 26389466 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTGTGAATTGA 26389407 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| || ||||| || ||| || | || || ||| | || ||||| || Sbjct 26389406 AACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 26389347 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 ||| || || |||||||| ||||| | ||||| ||||| Sbjct 26389346 GCCGTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 26389305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657866650922080