Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq10 96.9 3e-15 seq12 84.2 2e-11 seq11 84.2 2e-11 >seq10 Length=25316904 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 20999 GACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAG 21058 ||||||||||| | | || || |||| ||| ||| ||||||||||| || | ||| Sbjct 2742453 GACGTGAGCGAGAATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACGGAG 2742394 Query 21059 GCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAA 21118 ||||| ||||| || | ||| |||| || || || || || || || || ||||| Sbjct 2742393 ACCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTTGCAACATAAAA 2742334 Query 21119 CTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGC 21178 ||| || | ||| || ||||| || |||||| | | || || | || ||||| || Sbjct 2742333 CTGTGCAAACATGTGGCATGGAGGAAGTGCCATCAACTCCAGATCAGGAGGATTCCAAGC 2742274 Query 21179 GCACATAACGATGCGCCGATC 21199 | |||||| ||| || ||||| Sbjct 2742273 GGACATAATGATTCGTCGATC 2742253 >seq12 Length=33044737 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 20999 GACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAG 21058 ||||||||||| | | || || |||| ||| ||| ||||||||||| || ||||| Sbjct 2862675 GACGTGAGCGAGAATGCATGTGAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCGAG 2862616 Query 21059 GCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAA 21118 ||||| ||||| || | ||| |||| || || || || || || || || ||||| Sbjct 2862615 CCCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTTGCAACATAAAA 2862556 Query 21119 CTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGC 21178 ||| || | || || ||||| || |||||| | || || | || ||||| || Sbjct 2862555 CTGTGCAAACATGTCGCATGGAGGAAGTGCCATCAACTTCAGATCAGGAGGATTCCAAGC 2862496 Query 21179 GCACATAACGATGCGCCGATC 21199 |||| | ||| || ||||| Sbjct 2862495 CGACATTATGATTCGTCGATC 2862475 >seq11 Length=49703607 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 20999 GACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAG 21058 || |||||||| | | || || |||| ||| ||| ||||||||||| || ||||| Sbjct 3083235 GATGTGAGCGAGAATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCGAG 3083176 Query 21059 GCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAA 21118 ||||| ||||| || | ||| |||| || || || || || || || || ||||| Sbjct 3083175 ACCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTTGCAACATAAAA 3083116 Query 21119 CTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGC 21178 ||| || | ||| || ||||| || |||||| | || || | || ||||| || Sbjct 3083115 CTGTGCAAACATGTGGCATGGAGGAAGTGCCATCAACTTCAGATCAGGAGGATTCCAAGC 3083056 Query 21179 GCACATAACGATGCGCCGATC 21199 |||| | ||| || ||||| Sbjct 3083055 CGACATTATGATTCGTCGATC 3083035 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 20999 GACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAG 21058 || |||||||| | | || || |||| ||| ||| ||||||||||| || ||||| Sbjct 3083799 GATGTGAGCGAGAATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCGAG 3083740 Query 21059 GCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAA 21118 ||||| ||||| || | ||| |||| || || || || || || || || ||||| Sbjct 3083739 ACCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTTGCAACATAAAA 3083680 Query 21119 CTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGC 21178 ||| || | ||| || ||||| || |||||| | || || | || ||||| || Sbjct 3083679 CTGTGCAAACATGTGGCATGGAGGAAGTGCCATCAACTTCAGATCAGGAGGATTCCAAGC 3083620 Query 21179 GCACATAACGATGCGCCGATC 21199 |||| | ||| || ||||| Sbjct 3083619 CGACATTATGATTCGTCGATC 3083599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427581994493760