Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq9 167 3e-36 seq4 165 1e-35 seq12 114 2e-20 seq10 114 2e-20 seq16 113 6e-20 seq11 109 8e-19 seq7 107 3e-18 >seq9 Length=38094978 Score = 167 bits (184), Expect = 3e-36 Identities = 416/620 (67%), Gaps = 15/620 (2%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| ||||| ||||| | || |||||||| || || || || Sbjct 5073822 CAAGCGAAGTCGCAGTGTAGACCTTCGTCACGCGAGATCAGTTCGTTTGAGAAAGTAAGG 5073881 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAA 50078 || ||||| || || || || |||||||| || || || ||| | | || || ||||| Sbjct 5073882 CCAGGCATGAGACCTCGTTTCTTAAGCCAGAAGATTGA-GCAGAAGCTTCCGGAGAAGAA 5073940 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG-GCGCTGTCATGTA 50137 ||| ||||| || || || || | | || || | | | | | | | | | Sbjct 5073941 GATACCTTCGACGCAAGCGAAAGCGATGATTCGTTCAGCGAAGGTTTGAGATC-CGTCGA 5073999 Query 50138 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 50197 |||| | |||||| | ||| ||||| || ||||| || ||||| || || | Sbjct 5074000 TCCATGTCATAGCCCACTGGGCTTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCGGA 5074059 Query 50198 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 50257 |||||| || | | || ||| | ||||| | |||||||||| | ||||| ||||| | Sbjct 5074060 AGAGATGGTCTCTCTCTTTATTGTCTTTGATGTAAGTATCGAGGAGGAGACTGTACATCT 5074119 Query 50258 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 50317 | || || || || ||||| || ||||| |||||||||||| | ||||| | | | Sbjct 5074120 CGGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCCTCCGAGACTT 5074179 Query 50318 GCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 | || || | ||| || || ||| | ||| || ||| |||||||| || || Sbjct 5074180 GGACATC-GGACATGAAACGGGAAGCGAGATTCTCTAACACGATTCCGTCTGACGCGGCG 5074238 Query 50377 AAAAACGCCAATACATGTTTTATAAAAT---GTT---TTTCGTTGGGTGTTAGTTTATTC 50430 || || || | || ||||| || || | ||| |||||| | | |||| | | Sbjct 5074239 AAGAAGGCGAGGACGTGTTTGATGAAGTGGCGTTCGCCGTCGTTGAGGCT--GTTT-TCC 5074295 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || || | | |||| |||| |||||||||||| | ||||| || ||||| || || Sbjct 5074296 CAGTCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCAGTCCAGAAGGATGCTTCGGCT 5074355 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 50550 || || ||||| | |||||| | | || ||||||||||| ||| ||||| | ||| Sbjct 5074356 TTCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGGG 5074415 Query 50551 TTTGGTGCAAGGATCGGTTC 50570 |||||| || | ||| || Sbjct 5074416 GTTGGTGTTAGAAGCGGCTC 5074435 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 32305348 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 32305289 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || ||||| |||||| | |||||||||||| |||||| Sbjct 32305288 ATTAGATGTTCCATTTGTGCCACGAATATAACTTCCAGTTGCACGAATATTATGAATTGA 32305229 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || ||||| || ||| || | || || ||| | || ||||| || Sbjct 32305228 AACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTTTCATATAT 32305169 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||| || ||||||||||| ||||| | ||||| ||||| Sbjct 32305168 GCCGTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 32305127 >seq4 Length=30110606 Score = 165 bits (182), Expect = 1e-35 Identities = 412/617 (67%), Gaps = 9/617 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| ||||| ||||| | || |||||||| || || || || Sbjct 6029438 CACGCGAAGTCGCAGTGTAGACCTTCGTCACGCGAGATCAGTTCGTTTGAGAAAGTAAGG 6029497 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAA 50078 || ||||| || || || || |||||||| || || || ||| | | || || ||||| Sbjct 6029498 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATTGA-GCAGAAGCTTCCGGAGAAGAA 6029556 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG-GCGCTGTCATGTA 50137 ||| ||||| || || || || | | || || | | | | | | | | | Sbjct 6029557 GATACCTTCGACGCAAGCGAAAGCTATGATTCGTTCAGCGAAGGTCTGAGATC-CTTCGA 6029615 Query 50138 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 50197 |||| || ||||| | || ||||| || ||||| || ||||| || || | Sbjct 6029616 TCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCGGA 6029675 Query 50198 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 50257 |||||| || | | || || | ||||| | |||||||||| | ||||| ||||| | Sbjct 6029676 AGAGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTATCGAGGAGGAGACTGTACATCT 6029735 Query 50258 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 50317 | || || ||||| ||||| || ||||| ||||||||||| | ||||| | | | Sbjct 6029736 CGGAGTGGATGTTCTCAATCGCGATCTGGAATCCGTAGAAGGCACGCGCCTCCGAGACTT 6029795 Query 50318 GCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 | || || | ||| || ||| || | ||| || ||| |||||||| || ||| Sbjct 6029796 GGACATC-GGACATGAAACGTGAGGCGAGATTCTCTAGCACGATTCCGTCTGACGCGGCA 6029854 Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG---TTTATTCCAA 50433 || || || | || ||||| || || || |||| | | || || | ||| Sbjct 6029855 AAGAAGGCGAGGACGTGTTTGATGAAGTGGCGTTCGCCGTCGTTGAGGCTGTTCTCCCAG 6029914 Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 || | | |||| ||||| |||||||||||| | ||||| || ||||| || || || Sbjct 6029915 TCGCGGTTGTCTTGAGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTC 6029974 Query 50494 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 || ||||| | |||||| | | || ||||||||||| ||| ||||| | ||| || Sbjct 6029975 TTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGGGGTT 6030034 Query 50554 GGTGCAAGGATCGGTTC 50570 |||| || | ||| || Sbjct 6030035 GGTGTTAGAAGCGGCTC 6030051 >seq12 Length=33044737 Score = 114 bits (126), Expect = 2e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | |||| ||| || | ||| | || | || |||||||| |||||| Sbjct 564399 TCCTCCTTGGTCAACATATCGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 564340 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| |||| ||||| || || || || |||||| | ||||| || || || ||| Sbjct 564339 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 564280 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 || ||| || ||||| || | ||| || | || || ||| ||||| ||||| || Sbjct 564279 TACACCAATACCCCCAGCTAATTTGCTTATAACAGCACACTCTTTCAACGTGTCATATAT 564220 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||| ||||||||||| ||||| || ||||| |||||| Sbjct 564219 TCCCTCGATGCTATCATCCTTCATGCAAATCAGAAAGCAGCTA 564177 >seq10 Length=25316904 Score = 114 bits (126), Expect = 2e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | || | ||| || | ||| |||| | || |||||||| |||||| Sbjct 542226 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAAAACCCGCAGCATTGGAACAATACC 542167 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| |||| ||||| || || || || |||||| | ||||| || || || ||| Sbjct 542166 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 542107 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 || ||| || |||||||| | ||| || | || || ||| ||||| ||||| || Sbjct 542106 TACACCAATACCCCCTGCTAATTTGCTTATAACAGCACACTCTTTCAACGTGTCATATAT 542047 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 || || ||||||||||| ||||| || ||||| |||||| Sbjct 542046 TCCTTCGATGCTATCATCCTTCATGCAAACCAGAAAGCAGCTA 542004 >seq16 Length=29110212 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 22277660 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 22277601 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || || || |||||| | |||||||||||| |||||| Sbjct 22277600 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAATTGA 22277541 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || ||||| || ||| || | || || ||| | || ||||| || Sbjct 22277540 AACACCAATACCCCCAGCTGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 22277481 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||| || ||||||||||| ||||| | ||||| ||||| Sbjct 22277480 GCCGTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 22277439 >seq11 Length=49703607 Score = 109 bits (120), Expect = 8e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | ||| | ||| || | ||| | || | || |||||||| |||||| Sbjct 646820 TCCTCCTTGGTCAACGTAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATACC 646761 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| |||| ||||| || || || || |||||| | ||||| || || || ||| Sbjct 646760 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 646701 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 || ||| || || ||||| | ||| || | || || ||| ||||| ||||| || Sbjct 646700 TACACCAATACCGCCTGCTAATTTGCTTATAACAGCACACTCTTTCAACGTGTCATAAAT 646641 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||| ||||||||||| ||||| || | ||| |||||| Sbjct 646640 TCCCTCGATGCTATCATCCTTCATGCAAATCAAAAAGCAGCTA 646598 >seq7 Length=33617777 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 26389526 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 26389467 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || || || |||||| | ||||||||||| |||||| Sbjct 26389466 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTGTGAATTGA 26389407 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || ||||| || ||| || | || || ||| | || ||||| || Sbjct 26389406 AACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 26389347 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||| || ||||||||||| ||||| | ||||| ||||| Sbjct 26389346 GCCGTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 26389305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717934697267680