Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq4 86.0 6e-12 >seq4 Length=30110606 Score = 86.0 bits (94), Expect = 6e-12 Identities = 361/563 (64%), Gaps = 18/563 (3%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 ||||| || || || || || || || || | || ||||||||||| || || | Sbjct 6029438 CACGCGAAGTCGCAGTGTAGACCTTCGTCACGCGAGATCAGTTCGTTTGAGAAAGTAAGG 6029497 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGAA 13990 || ||||| | ||||||||| || | ||| || |||| |||| || ||||| ||||| Sbjct 6029498 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATTG-AGCAGAAGCTTCCGGAGAAGAA 6029556 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT---TTTGTT 14047 || || || || ||| || ||||| | |||||| | ||| | | | | || Sbjct 6029557 GATACCTTCGACGCAAGCGAAAGCTATGATTCGTTC----AGCGAAGGTCTGAGATCCTT 6029612 Query 14048 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14107 || |||||||| | ||||| | || ||| || | || || |||||||| || Sbjct 6029613 CG--ATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGGATGGTTTCAATCGC 6029670 Query 14108 ATTAAATAAATATTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 14165 || | || || |||||| | || ||| ||||| ||||| | || | || Sbjct 6029671 GCGGAAGAGATGGTCTCTCTCTTTGTTGTCTTTG--ATGTAAGTATCGAGGAGGAGACTG 6029728 Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCC 14225 ||||| || ||||| ||||| || || || ||||| || || || ||| | || ||| Sbjct 6029729 TACATCTCGGAGTGGATGTTCTCAATCGCGATCTGGAATCCGTAGAAGGCACGCGCCTCC 6029788 Query 14226 GACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285 || ||| || || || || | | ||| | ||| || || || || || Sbjct 6029789 GAGACTTGGACATCGGACATGAAACGTGAGGCGAGATTCTCTAGCACGATTCCGTCTGAC 6029848 Query 14286 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAG---TTTT 14342 || ||||| || || | | || ||| || |||| | || | | |||||| || Sbjct 6029849 GCGGCAAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGTTCGCCGTCGTTGAGGCTGTTC 6029908 Query 14343 TTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACA 14402 | ||| ||| || | ||| ||||||||||| || | ||||| || || | Sbjct 6029909 TCCCAGTCGCGGTTGTCTTGAGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCG 6029968 Query 14403 GCTTTTTTATACATTACCCATAT 14425 ||||| || ||||| |||| || Sbjct 6029969 GCTTTCTTGTACATCTCCCAGAT 6029991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479504854520800