Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq17 107 1e-18 seq14 100 2e-16 seq3 100 2e-16 seq13 95.1 9e-15 seq20 86.0 5e-12 seq8 86.0 5e-12 seq5 82.4 6e-11 >seq17 Length=35492130 Score = 107 bits (118), Expect = 1e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||| | | ||||||||| | || |||||| || | |||||||||| Sbjct 11454643 CCTCCCCTCAGACGCAGCACCAAATGAAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 11454584 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | |||| |||| ||||| ||||| || |||| ||||| ||||| | || Sbjct 11454583 AGTGTTCTCCCGTCTTCCAGCTGTTTCCCGGCGAAGATCAGACGCTGCTGATCCGGTGGG 11454524 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | |||| || || | | ||||| | ||| || Sbjct 11454523 ATCCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATCGTGTCTGATGACTCAACC 11454464 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAATTTT 43121 |||| ||||| || || || ||||| ||||||||||| || |||||||| || |||| Sbjct 11454463 TCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTTTTTTTTTTT 11454405 >seq14 Length=31758599 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||| | | ||||||||| | || ||| || || | |||||||||| Sbjct 11737844 CCTCCCCTCAGACGCAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCGGCT 11737785 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| |||| ||||| |||||||| |||| ||||| ||||| | || Sbjct 11737784 AGCGTTCTCCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAGACGCTGCTGATCCGGTGGG 11737725 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | |||| || || | | ||||| | ||| || Sbjct 11737724 ATCCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATCGTGTCTGATGACTCAACC 11737665 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115 |||| ||||| || || || ||||| ||||||||||| || |||||||| || Sbjct 11737664 TCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTTTTT 11737612 >seq3 Length=28500605 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||| | | ||||||||| | || ||| || || | |||||||||| Sbjct 10831928 CCTCCCCTCAGACGCAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCGGCT 10831869 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| |||| ||||| |||||||| |||| ||||| ||||| | || Sbjct 10831868 AGCGTTCTCCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAGACGCTGCTGATCCGGTGGG 10831809 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | |||| || || | | ||||| | ||| || Sbjct 10831808 ATCCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATCGTGTCTGATGACTCAACC 10831749 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115 |||| ||||| || || || ||||| ||||||||||| || |||||||| || Sbjct 10831748 TCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTTTTT 10831696 >seq13 Length=24101694 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||||| |||| ||| || || | ||||||||| | ||| || || | || || Sbjct 9157010 CACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAATCAGCCAAGGTGCGACCATCCTC 9157069 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 | || || |||||||| || | | ||| || || | || | || ||||| || Sbjct 9157070 TAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCTTTATCTTG 9157129 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 |||| ||||||| || ||| || || ||| ||| || |||| || || |||| Sbjct 9157130 GATCTTAGCTTTGACATTGTCAATAGTATC-TGAGCTCTCAACCTCTAGGGTGATTGTTT 9157188 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | ||||| ||||| |||||||| |||||||| Sbjct 9157189 TACCGGTGAGAGTCTTCACAAAGATTTGCAT 9157219 >seq20 Length=30099736 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||||| ||| ||| || || | ||||||||| | ||| || || | || || Sbjct 11036424 CACCAAATGGAGAGTCGACTCTTTCTGGATATTGTAATCAGCCAAGGTGCGACCATCCTC 11036483 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 | || || |||||||| || | | |||||| || | || | || ||||| || Sbjct 11036484 TAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGTGGGATTCCCTCTTTATCTTG 11036543 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 |||| ||||||| || ||| || || ||| ||| || || | || || |||| Sbjct 11036544 GATCTTAGCTTTGACATTGTCAATAGTATC-TGAGCTCTCAACCTCCAAAGTGATGGTTT 11036602 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | ||||| ||||| || ||||| |||||||| Sbjct 11036603 TACCGGTGAGAGTCTTAACAAAGATTTGCAT 11036633 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||| | ||||| ||| ||||||||| | |||||||| | Sbjct 14740344 CCCCCACGAAGACGAAGCACAAGATGGAGAGTCGACTCCTTTTGGATGTTGTAATCTGCA 14740285 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | ||||| || || || || | || |||||| || | || Sbjct 14740284 AGAGTCCGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGA 14740225 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || |||| || | ||||| || ||| |||||| ||| ||| | Sbjct 14740224 ATCCCTTCCTTGTC-CTGAATCTTGGCCTTGACATTGTCAATAGTGTCGG-AGCTCTCAA 14740167 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||| ||||| || || || | |||||||||||| |||||||| Sbjct 14740166 CCTCCAACGTGATAGTCTTCCCTGTCAAAGTTTTCACAAAGATTTGCAT 14740118 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| |||| || |||||| || | |||||||| | ||| ||||| | || || Sbjct 1019661 ACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAATCAGCCAAGGTACGGCCATCTTCA 1019720 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | ||||| ||||| || ||||||| ||| || || | || | |||||| || || ||| Sbjct 1019721 AGCTGTTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCTTCCTTGTC-CTG 1019779 Query 43021 A-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 | || | ||||| || | | ||||| ||| ||| || || | || || || | Sbjct 1019780 AATCTTTGCCTTGACATTGTCGATGGTGTCAG-AGCTCTCAACCTCGAGAGTGATGGTCT 1019838 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || || || |||||||| ||||||||||| Sbjct 1019839 TGCCAGTGAGTGTTTTCACGAAAATTTGCAT 1019869 >seq8 Length=27720346 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||||| ||| ||| || || | ||||||||| | ||| || || | || || Sbjct 6052417 CACCAAATGGAGGGTGGACTCTTTCTGGATATTGTAATCAGCCAAGGTGCGACCATCCTC 6052476 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 | || || |||||||| || | | ||| ||||| | || | || ||||| || Sbjct 6052477 TAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGTGGGATTCCCTCTTTATCTTG 6052536 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 |||| ||||||| || ||| || || ||| ||| || || | || || |||| Sbjct 6052537 GATCTTAGCTTTGACATTGTCAATAGTATC-TGAGCTCTCAACCTCCAAAGTGATGGTTT 6052595 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | ||||| ||||| || ||||| |||||||| Sbjct 6052596 TACCGGTGAGAGTCTTAACAAAGATTTGCAT 6052626 >seq5 Length=34971402 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||| || | || |||||| |||| || | || || ||||| ||| Sbjct 491965 TCCTTCTGGATGTTGTAGTCCGCTAAAGTACGTCCGTCCTCGAGCTGCTTTCCGGCGAAA 492024 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||||||||| || || | || | ||||| || || |||| | | || || || Sbjct 492025 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTCACATTG 492084 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | ||||| | ||| || || | || || || || || ||||| |||||||| Sbjct 492085 TCGATGGTGTCAGATGACTCCACCTCGAGTGTGATCGTCTTCCCCGTTAGGGTTTTCACG 492144 Query 43099 AAAATTTGCATTTTCTTAATTTT 43121 || || ||||| ||||| |||| Sbjct 492145 AAGATCTGCATCTTCTTCTTTTT 492167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381196640782296