Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq9 167 3e-36 seq6 167 3e-36 seq4 167 3e-36 seq7 104 3e-17 seq16 98.7 1e-15 >seq9 Length=38094978 Score = 167 bits (184), Expect = 3e-36 Identities = 415/621 (67%), Gaps = 17/621 (3%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| ||||| || || | || | |||||| || || || || Sbjct 5073822 CAAGCGAAGTCGCAGTGTAGACCTTCGTCACGCGAGATCAGTTCGTTTGAGAAAGTAAGG 5073881 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 || ||||| || || || || |||||||| || || || ||| | | | || || ||||| Sbjct 5073882 CCAGGCATGAGACCTCGTTTCTTAAGCCAGAAGATTGA-GCAGAAGCTTCCGGAGAAGAA 5073940 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT--GT 42241 ||| ||||| || || || || || | || || | | | || || || Sbjct 5073941 GATACCTTCGACGCAAGCGAAAGCGATGATTCGTTCAGCGAA----GGTTTGAGATCCGT 5073996 Query 42242 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 42299 ||||| | |||||| | ||| ||||| || ||||| || ||||| || || Sbjct 5073997 CGATCCATGTCATAGCCCACTGGGCTTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGC 5074056 Query 42300 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACA 42359 ||||||| || | | || ||| | ||||| | || ||||||| | ||||| |||| Sbjct 5074057 GGAAGAGATGGTCTCTCTCTTTATTGTCTTTGATGTAAGTATCGAGGAGGAGACTGTACA 5074116 Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419 | || || || || || ||||| || ||||| |||||||||||| | ||||| | | Sbjct 5074117 TCTCGGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCCTCCGAGA 5074176 Query 42420 CCTGTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCT 42478 | || || || | ||| || || ||| | ||| || ||| |||||||| || Sbjct 5074177 CTTGGACATC-GGACATGAAACGGGAAGCGAGATTCTCTAACACGATTCCGTCTGACGCG 5074235 Query 42479 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA----TTTATT 42534 || || || || | || ||||| || || | |||| ||| ||| | || | Sbjct 5074236 GCGAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGTTCG-CCGTCGTTGAGGCTGTTTTC 5074294 Query 42535 CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 ||| || | | |||| |||| |||||||||||| | ||||| || |||||||| || Sbjct 5074295 CCAGTCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCAGTCCAGAAGGATGCTTCGGC 5074354 Query 42595 CTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGG 42654 || || ||||| | |||||| | | || || |||||||| ||| ||||| | ||| Sbjct 5074355 TTTCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGG 5074414 Query 42655 ATTTGGTGCAAGGATCGGTTC 42675 |||||| || | ||| || Sbjct 5074415 GGTTGGTGTTAGAAGCGGCTC 5074435 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 32305348 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 32305289 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| |||| ||||| || || ||||| |||||| | ||||||||||| |||||| Sbjct 32305288 ATTAGATGTTCCATTTGTGCCACGAATATAACTTCCAGTTGCACGAATATTATGAATTGA 32305229 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| || ||||| || ||| || | || || ||| | || ||||| || Sbjct 32305228 AACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTTTCATATAT 32305169 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||| || || |||||||| ||||| | ||||| ||||| Sbjct 32305168 GCCGTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 32305127 >seq6 Length=26391736 Score = 167 bits (184), Expect = 3e-36 Identities = 415/621 (67%), Gaps = 17/621 (3%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| ||||| || || | || | |||||| || || || || Sbjct 4051009 CACGCGAAGTCGCAGTGTAGACCTTCGTCACGCGAGATGAGTTCGTTTGAGAAAGTAAGG 4051068 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 || ||||| || || ||||| |||||||| || || || ||| | | | || || ||||| Sbjct 4051069 CCAGGCATGAGTCCTCGCTTCTTAAGCCAGAAGATTGA-GCAGAAGCTTCCGGAGAAGAA 4051127 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT--GT 42241 ||| ||||| || || || || || | || || | | | ||| || || Sbjct 4051128 GATACCTTCGACGCAAGCGAAAGCGATGATTCGTTCAGCGAA----GGTCTGAGATCCGT 4051183 Query 42242 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 42299 ||||| || ||||| | || ||||| || ||||| || || || || || Sbjct 4051184 CGATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGC 4051243 Query 42300 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACA 42359 ||||||| || | | || || | ||||| | || ||||||| | ||||| |||| Sbjct 4051244 GGAAGAGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTATCGAGGAGGAGACTGTACA 4051303 Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419 | || || || || || ||||| || ||||| |||||||||||| | ||||| | | Sbjct 4051304 TCTCGGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCCTCCGAGA 4051363 Query 42420 CCTGTACTTCTGTACAA-AATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCT 42478 | || || || | ||| || || ||| | ||| || ||| |||||||| || Sbjct 4051364 CTTGGACATCGG-ACATGAAACGGGAAGCGAGATTCTCTAACACGATTCCGTCTGACGCG 4051422 Query 42479 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT----TTATT 42534 || || || || | || ||||| || || | |||| ||| ||| | || | Sbjct 4051423 GCGAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGTTCG-CCGTCGTTGAGGCTGTTCTC 4051481 Query 42535 CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 ||| || | | |||| ||||| |||||||||||| | ||||| || |||||||| || Sbjct 4051482 CCAGTCGCGGTTGTCTTGAGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGC 4051541 Query 42595 CTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGG 42654 || || ||||| | |||||| | | || || |||||||| ||| ||||| | ||| Sbjct 4051542 TTTCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGG 4051601 Query 42655 ATTTGGTGCAAGGATCGGTTC 42675 |||||| || | ||| || Sbjct 4051602 GGTTGGTGTTAGAAGCGGCTC 4051622 >seq4 Length=30110606 Score = 167 bits (184), Expect = 3e-36 Identities = 415/621 (67%), Gaps = 17/621 (3%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| ||||| || || | || | |||||| || || || || Sbjct 6029438 CACGCGAAGTCGCAGTGTAGACCTTCGTCACGCGAGATCAGTTCGTTTGAGAAAGTAAGG 6029497 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 || ||||| || || || || |||||||| || || || ||| | | | || || ||||| Sbjct 6029498 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATTGA-GCAGAAGCTTCCGGAGAAGAA 6029556 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 42243 ||| ||||| || || || || || | || || | | | ||| || | Sbjct 6029557 GATACCTTCGACGCAAGCGAAAGCTATGATTCGTTCAGCGAA----GGTCTGAGATCCTT 6029612 Query 42244 CCA--CTTTTGA--GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 42299 | | | ||| | ||||| | || ||||| || ||||| || ||||| || || Sbjct 6029613 CGATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGC 6029672 Query 42300 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACA 42359 ||||||| || | | || || | ||||| | || ||||||| | ||||| |||| Sbjct 6029673 GGAAGAGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTATCGAGGAGGAGACTGTACA 6029732 Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419 | || || || ||||| ||||| || ||||| ||||||||||| | ||||| | | Sbjct 6029733 TCTCGGAGTGGATGTTCTCAATCGCGATCTGGAATCCGTAGAAGGCACGCGCCTCCGAGA 6029792 Query 42420 CCTGTACTTCTGTACAA-AATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCT 42478 | || || || | ||| || ||| || | ||| || ||| |||||||| || Sbjct 6029793 CTTGGACATCGG-ACATGAAACGTGAGGCGAGATTCTCTAGCACGATTCCGTCTGACGCG 6029851 Query 42479 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT----TTATT 42534 ||||| || || | || ||||| || || | |||| ||| ||| | || | Sbjct 6029852 GCAAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGTTCG-CCGTCGTTGAGGCTGTTCTC 6029910 Query 42535 CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 ||| || | | |||| ||||| |||||||||||| | ||||| || |||||||| || Sbjct 6029911 CCAGTCGCGGTTGTCTTGAGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGC 6029970 Query 42595 CTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGG 42654 || || ||||| | |||||| | | || || |||||||| ||| ||||| | ||| Sbjct 6029971 TTTCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGG 6030030 Query 42655 ATTTGGTGCAAGGATCGGTTC 42675 |||||| || | ||| || Sbjct 6030031 GGTTGGTGTTAGAAGCGGCTC 6030051 >seq7 Length=33617777 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 26389526 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 26389467 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| |||| ||||| || || || || |||||| | |||||||||||| |||||| Sbjct 26389466 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTGTGAATTGA 26389407 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| || ||||| || ||| || | || || ||| | || ||||| || Sbjct 26389406 AACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 26389347 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||| || || |||||||| ||||| | ||||| ||||| Sbjct 26389346 GCCGTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 26389305 >seq16 Length=29110212 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 22277660 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 22277601 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| |||| ||||| || || || || |||||| | ||||||||||| |||||| Sbjct 22277600 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAATTGA 22277541 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| || ||||| || ||| || | || || ||| | || ||||| || Sbjct 22277540 AACACCAATACCCCCAGCTGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 22277481 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||| || || |||||||| ||||| | ||||| ||||| Sbjct 22277480 GCCGTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 22277439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670827019601120