Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq15 86.0 9e-12 seq11 86.0 9e-12 >seq15 Length=30521352 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 125478 GCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTT 125537 |||||||| ||||| |||||| | || || ||||| || |||| | |||||| || Sbjct 15358754 GCCATCTTCTGGCTTAAGAAGAGGGGTCTTATGCCTGGTTTGACCTTCTCAAACGAGCTT 15358813 Query 125538 ATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 ||||| |||||||||| ||||||||||||||||| Sbjct 15358814 ATATCGAGAGACGAGGGACTACACTGTGACTTTGC 15358848 >seq11 Length=49703607 Score = 86.0 bits (94), Expect = 9e-12 Identities = 132/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 |||||| ||||| ||| | | ||| |||||| | ||||||||| | ||| || Sbjct 3083018 TCAAGAATAATCCTGATGATCGACGAATCATAATGTCGGCTTGGAATCCTCCTGATCTGA 3083077 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC-TCGTACGATGGCAA 70302 | |||||||| || || || ||| |||||| | |||||||| | | | |||| | Sbjct 3083078 AGTTGATGGCACTTCCTCCATGCCACATGTTTG-CACAGTTTTATGTTGCAA-ATGGAGA 3083135 Query 70303 ATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACAT 70362 | | ||||| |||||||||| | ||||| ||||| ||||||||||| |||||||| Sbjct 3083136 ACTTTCATGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTCGGTGTACCGTTTAACAT 3083195 Query 70363 TGC 70365 ||| Sbjct 3083196 TGC 3083198 Score = 86.0 bits (94), Expect = 9e-12 Identities = 132/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 |||||| ||||| ||| | | ||| |||||| | ||||||||| | ||| || Sbjct 3083582 TCAAGAATAATCCTGATGATCGACGAATCATAATGTCGGCTTGGAATCCTCCTGATCTGA 3083641 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC-TCGTACGATGGCAA 70302 | |||||||| || || || ||| |||||| | |||||||| | | | |||| | Sbjct 3083642 AGTTGATGGCACTTCCTCCATGCCACATGTTTG-CACAGTTTTATGTTGCAA-ATGGAGA 3083699 Query 70303 ATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACAT 70362 | | ||||| |||||||||| | ||||| ||||| ||||||||||| |||||||| Sbjct 3083700 ACTTTCATGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTCGGTGTACCGTTTAACAT 3083759 Query 70363 TGC 70365 ||| Sbjct 3083760 TGC 3083762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740714496313120