Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq13 102 7e-17 seq8 98.7 8e-16 seq20 95.1 1e-14 seq11 95.1 1e-14 seq12 89.7 4e-13 seq17 82.4 6e-11 >seq13 Length=24101694 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||| |||||||| || || | || | ||||||| ||||| || || Sbjct 9157251 GTCGACTCCTTTTGGATATTGTAGTCAGCAAGAGTCCTTCCGTCCTCAAGCTGCTTCCCG 9157310 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | ||||| |||||||| ||| || | ||||||||||| ||| || ||| Sbjct 9157311 GCGAATATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCTTTGTCTTGAATCTTTGCTTTG 9157370 Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | | ||||| || | || ||| |||| ||| |||||||| ||||| || || Sbjct 9157371 ACATTGTCAACAGTGTC-CGAGCTCTCAACCTCGAGGGTGATGGTTTTGCCTGTCAACGT 9157429 Query 19024 TTTGACAAAAATTTGCAT 19041 |||||||| || ||||| Sbjct 9157430 CTTGACAAAGATCTGCAT 9157447 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || |||||||| || ||||||||||| || | || | ||||| Sbjct 968879 ACCAAGTGAAGAGTTGACTCCTTCTGGATATTGTAATCTGCAAGAGTCCGACCATCCTCG 968938 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 || || ||||| || | || ||||||||||||||| || | ||||| ||||| | Sbjct 968939 AGATGCTTACCAGCGAAGATGAGTCTCTGCTGATCCGGGGAAATTCCCTCCTTGTCCTGA 968998 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || ||| || | | | | || || | ||| |||| ||| |||||||| Sbjct 968999 ATCTTGGCTTTGACATTGTCAATGGTGTCTGAACTCTCAACCTCGAGGGTGATGGTTTTG 969058 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || ||||| |||||||| || ||||| Sbjct 969059 CCAGTCAAAGTCTTGACAAAGATCTGCAT 969087 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | |||||||| || || |||||||| || || | || | ||||| Sbjct 11436741 CACCAAGTGGAGAGTAGACTCTTTCTGGATATTGTAGTCAGCTAGCGTGCGACCATCCTC 11436682 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| ||| | ||||| |||||||| ||| || | || ||||| || Sbjct 11436681 AAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGAATCCCTTCTTTATCCTG 11436622 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || ||| || | | | | ||||| | ||| |||| ||| |||||||| Sbjct 11436621 AATCTTAGCTTTAACATTGTCAATCGTATCCGAACTCTCAACCTCGAGGGTGATGGTTTT 11436562 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || || || || ||||| || ||||| Sbjct 11436561 ACCAGTCAACGTCTTCACAAAGATCTGCAT 11436532 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | || ||||| || || ||||||||||| |||| || | ||||| Sbjct 9157010 CACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAATCAGCCAAGGTGCGACCATCCTC 9157069 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| ||| | ||||| |||||||| ||| || | |||||||| || Sbjct 9157070 TAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCTTTATCTTG 9157129 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || ||| || | | | | |||||| ||| || | ||| || ||||| Sbjct 9157130 GATCTTAGCTTTGACATTGTCAATAGTATCTGAGCTCTCAACCTCTAGGGTGATTGTTTT 9157189 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || | ||| || ||||| |||||||| Sbjct 9157190 ACCGGTGAGAGTCTTCACAAAGATTTGCAT 9157219 >seq8 Length=27720346 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 |||||||||||||| |||||||| || || | || | ||||||| ||||| ||||| Sbjct 6052658 GTAGACTCCTTTTGGATATTGTAGTCAGCAAGAGTCCTTCCGTCCTCAAGCTGCTTACCA 6052717 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | ||||| |||||||| ||| || | |||||||| || ||| || ||| Sbjct 6052718 GCGAAGATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCTTTATCTTGAATCTTTGCTTTG 6052777 Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | | | || || | || ||| |||| ||| |||||||| ||||| || || Sbjct 6052778 ACATTGTCAATGGTGTC-CGAGCTCTCAACCTCGAGGGTGATGGTTTTGCCTGTCAACGT 6052836 Query 19024 TTTGACAAAAATTTGCAT 19041 |||||||| || ||||| Sbjct 6052837 CTTGACAAAGATCTGCAT 6052854 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | ||||||||||| ||||| ||||| || |||| || || |||| Sbjct 1542550 AAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTCCTGCCGTCT 1542491 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || ||||| ||||| ||| | || | |||||||| ||| || | ||||| ||||| Sbjct 1542490 TCAAGCTGCTTACCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCT 1542431 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||||| ||| || | | ||| || || |||| || | |||||||| Sbjct 1542430 TGGATTTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTCTCCACCTCCAAAGTAATGGTC 1542371 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || | ||| ||||| || |||||||| Sbjct 1542370 TTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 1542339 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | ||||||||||| ||||| ||||| || |||| || || |||| Sbjct 1543006 AAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTCCTGCCGTCT 1542947 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || ||||| ||||| ||| | || | |||||||| ||| || | ||||| ||||| Sbjct 1542946 TCAAGCTGCTTACCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCT 1542887 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||||| ||| || | | ||| || || |||| || | |||||||| Sbjct 1542886 TGGATTTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTCTCCACCTCCAAAGTAATGGTC 1542827 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || | ||| ||||| || |||||||| Sbjct 1542826 TTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 1542795 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | || ||||| || || ||||||||||| |||| || | ||||| Sbjct 6052417 CACCAAATGGAGGGTGGACTCTTTCTGGATATTGTAATCAGCCAAGGTGCGACCATCCTC 6052476 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| ||| | ||||| |||||||||||| || | |||||||| || Sbjct 6052477 TAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGTGGGATTCCCTCTTTATCTTG 6052536 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || ||| || | | | | |||||| ||| || | || |||||||| Sbjct 6052537 GATCTTAGCTTTGACATTGTCAATAGTATCTGAGCTCTCAACCTCCAAAGTGATGGTTTT 6052596 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || | ||| || ||||| |||||||| Sbjct 6052597 ACCGGTGAGAGTCTTAACAAAGATTTGCAT 6052626 >seq20 Length=30099736 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || ||||| || || |||||||| || || | ||| | | ||||| Sbjct 14739871 CACCAAGTGGAGAGTGGACTCTTTCTGGATATTGTAGTCAGCGAGTGTATGACCATCCTC 14739812 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| ||| | ||||| |||||||||||| || | |||||||| || Sbjct 14739811 AAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGTGGGATCCCCTCTTTATCCTG 14739752 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || ||| || | | | | |||||| | ||| |||| || |||||||| Sbjct 14739751 GATCTTAGCTTTAACATTGTCAATAGTATCCGAACTCTCAACCTCGAGAGTGATGGTTTT 14739692 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || || || || ||||| || ||||| Sbjct 14739691 ACCAGTCAACGTCTTCACAAAGATCTGCAT 14739662 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| || | ||||| ||||| ||| | ||||||||||| || || |||||||| ||| Sbjct 3387025 CCTCCACGAAGCCTTAGCACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAATCAGCC 3387084 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| || | || || || || || |||||| | || | |||||||| ||| || Sbjct 3387085 AATGTCCTGCCATCTTCAAGTTGCTTTCCCGCAAAGATCAACCTCTGCTGGTCCGGTGGG 3387144 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||||| || || || ||| || | | ||| || || |||| Sbjct 3387145 ATACCCTCTTTATCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTCTCCACC 3387204 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || || || | ||| || || || |||||||| Sbjct 3387205 TCCAAAGTGATGGTCTTTCCAGTGAGAGTCTTAACGAAGATTTGCAT 3387251 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | || ||||| ||||| |||||||| || || | || | ||||||| Sbjct 11036652 CACCAAATGGAGGGTCGACTCTTTTTGGATATTGTAGTCAGCAAGAGTCCTTCCGTCCTC 11036711 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| || | ||||| |||||||| ||| || | ||||||||||| Sbjct 11036712 AAGCTGCTTACCAGCGAATATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCTTTGTCTTG 11036771 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || ||| || | | | | |||||| ||| || | || || ||||| Sbjct 11036772 AATCTTGGCTTTGACGTTGTCAATAGTATCTGAGCTCTCAACCTCTAGAGTGATTGTTTT 11036831 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || || |||||||| || ||||| Sbjct 11036832 GCCTGTCAACGTCTTGACAAAGATCTGCAT 11036861 >seq11 Length=49703607 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| |||||| | |||| ||| | || |||||||| || ||||||||||| || Sbjct 21796019 CCACCTCTCAACCTAAGAACCAAGTGTAGTGTTGACTCCTTCTGGATATTGTAATCGGCA 21796078 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||| ||||||||||| ||| | |||||||||||||| ||| || Sbjct 21796079 AGCGTACGACCATCCTCAAGCTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCCGGAGGG 21796138 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| || ||||| || || || || | | ||| || ||| || Sbjct 21796139 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAGCTTTCAACC 21796198 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| ||||| || | ||| || ||||| |||||||| Sbjct 21796199 TCAAGGGTTATGGTCTTACCAGTAAGAGTCTTAACAAAGATTTGCAT 21796245 >seq12 Length=33044737 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| |||||| | |||| ||| | || ||||||||||| ||||||||||| || Sbjct 24358137 CCACCTCTCAACCTAAGAACCAAGTGGAGTGTTGACTCCTTTTGGATATTGTAATCAGCA 24358196 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 | || | ||||| ||||||||||| ||| | |||||||||||||| ||| Sbjct 24358197 AGCGTACGACCATCCTCAAGCTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCC 24358250 >seq17 Length=35492130 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | ||| |||||||| || || |||||||| || | |||| | |||| || Sbjct 11454626 CACCAAATGAAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGTGTTCTCCCGTCTTC 11454567 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||||||| || || | || || | |||||||||| || | || || ||||| Sbjct 11454566 CAGCTGTTTCCCGGCGAAGATCAGACGCTGCTGATCCGGTGGGATCCCTTCCTTGTCTTG 11454507 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| ||| || | | ||| || || | ||| || | || || || || Sbjct 11454506 GATCTTCGCTTTCACATTGTCGATCGTGTCTGATGACTCAACCTCTAGTGTTATCGTCTT 11454447 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || |||| ||||| ||||| || |||||||| Sbjct 11454446 CCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 11454414 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 ||||| || |||||||| || || |||||||| || | || | || || ||||| Sbjct 33393472 TGCAAAGTTGACTCCTTCTGGATGTTGTAATCAGCAAGAGTGCGACCATCTTCGAGCTGC 33393413 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| | || |||||||| |||||| || | ||| || ||||| || || Sbjct 33393412 TTGCCAGCAAAGATTAGTCTCTGTTGATCCGGAGGGATGCCTTCCTTGTCCTGGATCTTA 33393353 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 ||| || | | ||| || || | ||| ||| | ||||||||||||||| ||| Sbjct 33393352 GCTTTAACATTGTCGATGGTGTCTGAACTCTCAACTTCTAGGGTAATGGTTTTACCGGTT 33393293 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 | || ||||| || || ||||| Sbjct 33393292 AGGGTCTTGACGAATATCTGCAT 33393270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414384782425528