Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq20 84.2 1e-11 seq8 84.2 1e-11 >seq20 Length=30099736 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| || | ||| ||||| || || || ||||| |||| |||| | | Sbjct 5698960 CGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTCCTGCCG 5698901 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||||||||| || || || | |||||||||| || || || ||||| Sbjct 5698900 TCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTTA 5698841 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || ||| |||| | || | | ||| |||||| | | ||| ||||| || Sbjct 5698840 TCTTGGATCTTGGCCT---TCACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGTGTG 5698784 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || ||||| || |||||||||||||| Sbjct 5698783 ATGGTCTTCCCGGTGAGAGTCTTGACGAAAATTTGCAT 5698746 >seq8 Length=27720346 Score = 84.2 bits (92), Expect = 1e-11 Identities = 147/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||| || | |||||||| || || || ||||| |||| ||| || | || || Sbjct 24116759 CACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCCAATGTGCGACCATCCTC 24116700 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC--- 33276 | ||||||||| || || | |||||||||||||| || || ||||| || || Sbjct 24116699 AAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATACCTTCCTTATCCTG 24116640 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | | | ||| || || | | ||| |||||| | | ||| ||||| || || || Sbjct 24116639 GATTTTAGCC---TTCACGTTATCAATGGTGTCGGAGCTCTCAACCTCCAGTGTGATGGT 24116583 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || ||||| || |||||||| ||||| Sbjct 24116582 CTTGCCTGTGAGAGTCTTGACGAAAATCTGCAT 24116550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318633027584376