Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq13 114 9e-21 seq8 100 2e-16 seq20 96.9 2e-15 >seq13 Length=24101694 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||| | | ||||||||| || ||| |||||| || ||||| ||||| Sbjct 9156992 ACCACCTCTCAGACGAAGCACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAATCAGC 9157051 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || |||| || | || || || ||||| || | || ||||||||| | || Sbjct 9157052 CAAGGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTGG 9157111 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||||||| || || |||||| | ||| |||||||| ||| || Sbjct 9157112 GATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATAGTATCTGAGCTCTCAAC 9157171 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || |||||||||||||| | |||||||||||| |||||||| Sbjct 9157172 CTCTAGGGTGATTGTTTTACCGGTGAGAGTCTTCACAAAGATTTGCAT 9157219 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | | | |||||| || || || |||||| || ||||| || || Sbjct 11436759 ACCACCTCTGAGACGAAGCACCAAGTGGAGAGTAGACTCTTTCTGGATATTGTAGTCAGC 11436700 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || |||| || | || || || ||||| || | || ||||||||| |||| Sbjct 11436699 TAGCGTGCGACCATCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGAGG 11436640 Query 44014 TACACCTTCTTTATC-TGAAATTTTTTGTTTGACCATAG-CAACAGTATCTGCCGGCTCC 44071 | ||||||||||| |||| | || | || | ||| | ||| ||||| | ||| Sbjct 11436639 AATCCCTTCTTTATCCTGAA--TCTTAGCTTTAACATTGTCAATCGTATCCGAACTCTCA 11436582 Query 44072 ACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || |||| || || |||||||| || || ||||||||||| || ||||| Sbjct 11436581 ACCTCGAGGGTGATGGTTTTACCAGTCAACGTCTTCACAAAGATCTGCAT 11436532 >seq8 Length=27720346 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||| | | ||||||||| || ||| |||||| || ||||| ||||| Sbjct 6052399 ACCACCTCTCAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATATTGTAATCAGC 6052458 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || |||| || | || || || ||||| || | || ||||| ||| | || Sbjct 6052459 CAAGGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGTGG 6052518 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||||||| || || |||||| | ||| |||||||| ||| || Sbjct 6052519 GATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATAGTATCTGAGCTCTCAAC 6052578 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||||||||| | |||||| ||||| |||||||| Sbjct 6052579 CTCCAAAGTGATGGTTTTACCGGTGAGAGTCTTAACAAAGATTTGCAT 6052626 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | | | |||||| || || || |||||| || ||||| || || Sbjct 8687920 ACCACCTCTGAGACGAAGCACCAAGTGGAGAGTAGACTCTTTCTGGATATTGTAGTCAGC 8687861 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || |||| || | || || || ||||| || | || ||||||||| |||| Sbjct 8687860 TAGCGTGCGACCATCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGAGG 8687801 Query 44014 TACACCTTCTTTATC-TGAAATTTTTTGTTTGACCATAG-CAACAGTATCTGCCGGCTCC 44071 | ||||||||||| |||| | || | || | ||| | ||| |||||| | ||| Sbjct 8687800 AATCCCTTCTTTATCCTGAA--TCTTAGCTTTAACATTGTCAATAGTATCCGAACTCTCA 8687743 Query 44072 ACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || |||| || || ||||| || || || ||||||||||| |||||||| Sbjct 8687742 ACCTCGAGGGTGATGGTTTTGCCAGTCAACGTCTTCACAAAGATTTGCAT 8687693 >seq20 Length=30099736 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||| | | ||||||||| || || |||||| || ||||| ||||| Sbjct 11036406 ACCACCTCTCAGACGAAGCACCAAATGGAGAGTCGACTCTTTCTGGATATTGTAATCAGC 11036465 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || |||| || | || || || ||||| || | || || |||||| | || Sbjct 11036466 CAAGGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGTGG 11036525 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||||||| || || |||||| | ||| |||||||| ||| || Sbjct 11036526 GATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATAGTATCTGAGCTCTCAAC 11036585 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||||||||| | |||||| ||||| |||||||| Sbjct 11036586 CTCCAAAGTGATGGTTTTACCGGTGAGAGTCTTAACAAAGATTTGCAT 11036633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354616700819376