Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq36 558 1e-154 seq16 558 1e-154 seq18 441 2e-119 >seq36 Length=171746 Score = 558 bits (618), Expect = 1e-154 Identities = 724/995 (73%), Gaps = 4/995 (0%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || || || ||||| ||||| | || ||||| || || | Sbjct 56624 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 56565 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | | || ||| || ||||| |||| || || || || || Sbjct 56564 ATGATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCT 56505 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || | | |||||||||||| Sbjct 56504 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 56445 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 |||||||| || || | |||| | || || || || |||| ||||| |||||| Sbjct 56444 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 56385 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | | | ||||| ||| |||||||||| ||||| ||| |||| |||| Sbjct 56384 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 56325 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649 | ||||| ||| | || ||||| || ||| | |||||||||| || | | Sbjct 56324 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 56265 Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709 | || ||| | || ||||| || |||||| |||| || | |||| || |||| Sbjct 56264 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCT 56205 Query 19710 GTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768 || ||||| | | || ||| |||| || || |||||| ||||||||||||||| || || Sbjct 56204 GT-TTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 56146 Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828 |||||||||||| ||||||||| | |||||||| || || ||||| || |||||||| || Sbjct 56145 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 56086 Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888 || |||||| | ||||| ||||| |||||||| || || || || ||||||||| || Sbjct 56085 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 56026 Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGG 19948 ||||| ||||| | |||| |||||| || || ||| ||| || | || Sbjct 56025 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 55966 Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008 || | ||||||||||| ||||| || || || ||||| ||||| ||||| || ||||| Sbjct 55965 TTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 55906 Query 20009 GAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGC 20068 ||||||| || ||||||||| |||||| ||||||||||||||||||||||| | || Sbjct 55905 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 55846 Query 20069 TACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAA 20128 ||| || || || || || ||| |||| | | || || | |||||||||||||| Sbjct 55845 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 55786 Query 20129 CCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAA 20187 ||| |||||||| || || ||||| |||||||||||| ||||| ||| | || | Sbjct 55785 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAA-GGACGTGTTATTAATA 55727 Query 20188 CATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATG 20247 | ||||||||| | | || | |||||||| || | ||||||||||| || || |||| Sbjct 55726 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 55667 Query 20248 CTCATAACTTCCCACTTGATTTAGCTTCGGCTGAG 20282 |||| |||||||| || || ||||| | | |||| Sbjct 55666 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 55632 >seq16 Length=29110212 Score = 558 bits (618), Expect = 1e-154 Identities = 724/995 (73%), Gaps = 4/995 (0%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || || || ||||| ||||| | || ||||| || || | Sbjct 16535130 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 16535189 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | | || ||| || ||||| |||| || || || || || Sbjct 16535190 ATGATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCT 16535249 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || | | |||||||||||| Sbjct 16535250 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 16535309 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 |||||||| || || | |||| | || || || || |||| ||||| |||||| Sbjct 16535310 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 16535369 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | | | ||||| ||| |||||||||| ||||| ||| |||| |||| Sbjct 16535370 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 16535429 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649 | ||||| ||| | || ||||| || ||| | |||||||||| || | | Sbjct 16535430 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 16535489 Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709 | || ||| | || ||||| || |||||| |||| || | |||| || |||| Sbjct 16535490 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCT 16535549 Query 19710 GTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768 || ||||| | | || ||| |||| || || |||||| ||||||||||||||| || || Sbjct 16535550 GT-TTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 16535608 Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828 |||||||||||| ||||||||| | |||||||| || || ||||| || |||||||| || Sbjct 16535609 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 16535668 Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888 || |||||| | ||||| ||||| |||||||| || || || || ||||||||| || Sbjct 16535669 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 16535728 Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGG 19948 ||||| ||||| | |||| |||||| || || ||| ||| || | || Sbjct 16535729 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 16535788 Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008 || | ||||||||||| ||||| || || || ||||| ||||| ||||| || ||||| Sbjct 16535789 TTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 16535848 Query 20009 GAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGC 20068 ||||||| || ||||||||| |||||| ||||||||||||||||||||||| | || Sbjct 16535849 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 16535908 Query 20069 TACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAA 20128 ||| || || || || || ||| |||| | | || || | |||||||||||||| Sbjct 16535909 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 16535968 Query 20129 CCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAA 20187 ||| |||||||| || || ||||| |||||||||||| ||||| ||| | || | Sbjct 16535969 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAA-GGACGTGTTATTAATA 16536027 Query 20188 CATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATG 20247 | ||||||||| | | || | |||||||| || | ||||||||||| || || |||| Sbjct 16536028 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 16536087 Query 20248 CTCATAACTTCCCACTTGATTTAGCTTCGGCTGAG 20282 |||| |||||||| || || ||||| | | |||| Sbjct 16536088 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 16536122 >seq18 Length=20869551 Score = 441 bits (488), Expect = 2e-119 Identities = 543/737 (74%), Gaps = 4/737 (1%) Strand=Plus/Minus Query 19548 GATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGA 19607 ||||| ||| || ||||||| ||||| ||| |||| |||| | ||||| ||| | || Sbjct 2057519 GATGAATGGCTACACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGT 2057460 Query 19608 GTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGG 19667 ||||| || ||| | |||||||||| || | | | || ||| | || ||| Sbjct 2057459 GTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGG 2057400 Query 19668 ATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCC 19726 || | || |||||| |||| || | ||| || |||||| ||||| | | || || Sbjct 2057399 ATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCGACTGCTGT-TTTCTTGATCTATCC 2057341 Query 19727 ATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTT 19786 | |||| || || |||||| ||||||||||||||| || |||||||||||||| ||||| Sbjct 2057340 AATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTT 2057281 Query 19787 TATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGT 19846 |||| | |||||||| || || ||||| || |||||||| || || |||||| | ||||| Sbjct 2057280 TATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGT 2057221 Query 19847 TGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTC 19906 ||||| |||||||| || || || || ||||||||| || ||||| ||||| Sbjct 2057220 AGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAG 2057161 Query 19907 GATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGA 19966 | |||| |||||| || || ||| ||| || | || || | ||||||||||| Sbjct 2057160 TTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGA 2057101 Query 19967 TGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATA 20026 ||||| || || || ||||| ||||| ||||| || ||||| ||||||| || ||||| Sbjct 2057100 AGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATA 2057041 Query 20027 TGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGG 20086 |||| |||||| ||||||||||||||||||||||| | || ||| || || || || Sbjct 2057040 TGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGG 2056981 Query 20087 CATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTT 20146 || ||| |||| | | || || | ||||||||||||||||| |||||||| || || Sbjct 2056980 TATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTT 2056921 Query 20147 TAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAA 20205 ||||| |||||||||||| ||||| ||| | || || ||||||||| | | | Sbjct 2056920 CAACCAATCAGTAGTTGATAGTCAA-GGACGTGTTATTAATACTTGGGCTGATATTATTA 2056862 Query 20206 ATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTG 20265 | | |||||||| || | ||||||||||| || || |||||||| |||||||| || | Sbjct 2056861 ACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAG 2056802 Query 20266 ATTTAGCTTCGGCTGAG 20282 | ||||| | | |||| Sbjct 2056801 ACCTAGCTGCTGTTGAG 2056785 Score = 242 bits (268), Expect = 1e-59 Identities = 279/373 (75%), Gaps = 2/373 (1%) Strand=Plus/Minus Query 19911 ATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAA 19970 |||| |||||| || || ||| ||| || | || || | ||||||||||| ||| Sbjct 2056511 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAA 2056452 Query 19971 GAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCT 20030 || || || || ||||| ||||| ||||| || ||||| ||||||| || ||||||||| Sbjct 2056451 GAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCT 2056392 Query 20031 TCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATA 20090 |||||| ||||||||||||||||||||||| | || ||| || || || || || Sbjct 2056391 AGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATT 2056332 Query 20091 TGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAAC 20150 ||| |||| | | || || | ||||||||||||||||| |||||||| || || ||| Sbjct 2056331 TGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAAC 2056272 Query 20151 CAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAG 20209 || |||||||||||| ||||| ||| | || || ||||||||| | | || | Sbjct 2056271 CAATCAGTAGTTGATAGTCAA-GGACGTGTTATTAATACTTGGGCTGATATTATTAACCG 2056213 Query 20210 AGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTT 20269 |||||||| || | ||||||||||| || || |||||||| |||||||| || || | Sbjct 2056212 TGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCT 2056153 Query 20270 AGCTTCGGCTGAG 20282 |||| | | |||| Sbjct 2056152 AGCTGCTGTTGAG 2056140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144377772340272