Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq36 542 3e-149 seq16 542 3e-149 seq18 423 2e-113 seq4 149 7e-31 >seq36 Length=171746 Score = 542 bits (600), Expect = 3e-149 Identities = 724/1001 (72%), Gaps = 4/1001 (0%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||| | ||| |||| |||||| || || | ||| |||| ||||| ||||| || Sbjct 56624 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 56565 Query 170726 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 170784 |||||||| | ||| | || || || || ||| ||| | |||||||| |||||||| Sbjct 56564 ATGATCCC-TACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCC 56506 Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACA 170843 |||||| ||||| || || || | ||||| ||| | || ||| ||||| || || |||| Sbjct 56505 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTT-TACGGAAACA 56447 Query 170844 ACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCA 170903 | || || || ||||| | |||| |||| || || || || || || || || | Sbjct 56446 ATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGA 56387 Query 170904 TCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTA 170963 |||||||||| || | | || || ||| | |||||||| |||||||| | || || Sbjct 56386 TCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTG 56327 Query 170964 TTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACA 171023 || | ||||| | |||| | || || |||||| | |||||||||| | | Sbjct 56326 TTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 56267 Query 171024 GACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTG 171083 | || || ||| | |||||||| ||| ||||| ||||| ||||| | || || || Sbjct 56266 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTG 56207 Query 171084 CAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 171143 | || ||| | | |||||| | |||||||| || |||||||||||||| ||||| | Sbjct 56206 CTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 56147 Query 171144 TCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACC 171203 |||| ||||| |||||||| ||| | || ||||| || || |||||||| || ||||||| Sbjct 56146 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 56087 Query 171204 CCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACG 171263 | || || ||| ||||||||| ||| | ||||| || || || ||||| ||||| | Sbjct 56086 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 56027 Query 171264 GTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACG 171323 |||| | || || ||| | | ||||| || || || || || || | || | | Sbjct 56026 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 55967 Query 171324 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 171383 | || | ||||| |||||||||||||| || |||||||| |||||||| || || || | Sbjct 55966 GTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 55907 Query 171384 GTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCG 171443 | |||| |||||||| ||||| |||||||| |||||||| ||||| |||||| | | Sbjct 55906 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 55847 Query 171444 CTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCA 171503 | | | || ||||| || | ||||| || || | ||||| |||| ||||| |||| Sbjct 55846 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 55787 Query 171504 ACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAA 171563 |||| || || ||||| |||||||||||||| || ||| | ||| || | | Sbjct 55786 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 55727 Query 171564 CATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATG 171623 | |||| ||| || ||||| | || |||||||| |||||||||||||||||| | |||| Sbjct 55726 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 55667 Query 171624 CACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACA 171664 | ||||||||||| ||||||||||| ||| |||| || || Sbjct 55666 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCA 55626 Score = 401 bits (444), Expect = 7e-107 Identities = 718/1049 (68%), Gaps = 21/1049 (2%) Strand=Plus/Minus Query 171784 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 171843 ||| ||| | ||||| || | ||||| |||||| ||| || || ||||| || | | Sbjct 115926 AAAAAGATTTATTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAG 115867 Query 171844 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 171903 | ||||||||||| || ||||| |||||||| || | || | || ||||||||| || Sbjct 115866 GTTGGTCTGGTCTATTGCTTTTCCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAG 115807 Query 171904 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 171963 | || || || || || |||||||| || ||||| | || || ||| | || || Sbjct 115806 GTACAACCTTTGTAACTTCATGGTATACTCATGGGTTGGCCAGTTCCTATTTAGAAGGTT 115747 Query 171964 CAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 172023 || |||||||| || ||||| || || |||| | || | | | ||| | | |||| Sbjct 115746 GCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGT 115687 Query 172024 TCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 172083 | || ||||| ||||| |||||||||||| || || |||| |||||||||||| || | Sbjct 115686 TACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGT 115627 Query 172084 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTG 172143 || ||||| || | || || | || | | | |||||||| ||| | | || |||| Sbjct 115626 GGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTG 115567 Query 172144 AGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTG 172203 | |||| || |||| | || ||||| || ||| | |||||||| | |||| Sbjct 115566 AACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTG 115507 Query 172204 CAGTATTCACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCAC 172263 | || || |||| ||||| |||||| ||||||| | |||||||||| || | Sbjct 115506 CTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGC 115447 Query 172264 CTTCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATA 172323 || |||||||| || || || ||||| | || | || | || || || || ||| Sbjct 115446 CTAGTTTTGGTGTAGCCGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATT 115387 Query 172324 TAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTAT 172383 || | || ||||||||||||||||| || || ||| |||| || | || | |||| Sbjct 115386 GGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTAT 115327 Query 172384 GTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTG 172443 | || || |||||||| || ||| | || || || | |||||| || Sbjct 115326 GCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGA---------------TG 115282 Query 172444 AAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTT 172503 | | | | ||| |||| ||| | || || | || || || | |||||||||| Sbjct 115281 --GTGATGGTGCAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTT 115228 Query 172504 ATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACA 172563 || ||| | || |||||| | || |||||||| || ||||| | || ||||| || | Sbjct 115227 ATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATA 115168 Query 172564 AAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTA 172623 || | | ||||| ||| ||||||| || ||||| || | ||| | |||| || Sbjct 115167 AACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTC 115108 Query 172624 TAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAA 172683 | || | || ||||| || | ||||| | || || ||||| || || ||||| || Sbjct 115107 TTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAAATCC 115048 Query 172684 GAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAG 172743 | ||||| ||||| || || ||||| || ||||| ||||| || |||||| | || |||| Sbjct 115047 GTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAG 114988 Query 172744 GTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAG 172803 |||| | || |||||| | || ||||| || ||||| ||| || | ||||| || | Sbjct 114987 GTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 114928 Query 172804 AAGTCTTGCCACGAGGCAACGCACTATAA 172832 | || | ||||| || ||||| || ||| Sbjct 114927 AGGTTCTACCACGTGGAAACGCTCTTTAA 114899 Score = 383 bits (424), Expect = 2e-101 Identities = 714/1049 (68%), Gaps = 21/1049 (2%) Strand=Plus/Plus Query 171784 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 171843 ||| ||| | ||||| || | ||||| ||||| ||| || || ||||| || | | Sbjct 48831 AAAAAGATTTATTTGATATTATGGATGACCGGTTACGGAGGGACCGCTTCGTTTTTGTAG 48890 Query 171844 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 171903 | ||||||||||| | || || |||||||| || | | | || ||||||||| || Sbjct 48891 GTTGGTCTGGTCTATAGCTCTTCCCTTGTGCCTATTTCTCTTTAGGGGGTTGGTTCACAG 48950 Query 171904 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 171963 | || || || || || |||||||| || ||||| | || || ||| | || || Sbjct 48951 GTACAACCTTTGTAACTTCATGGTATACTCATGGGTTGGCCAGTTCCTATTTAGAAGGTT 49010 Query 171964 CAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 172023 || |||||||| || ||||| || || |||| | || | | | ||| | | |||| Sbjct 49011 GCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGT 49070 Query 172024 TCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 172083 | || ||||| ||||| |||||||||||| || || |||| |||||||||||| || | Sbjct 49071 TACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGT 49130 Query 172084 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTG 172143 || ||||| || | || || | || | | | |||||||| ||| | | || |||| Sbjct 49131 GGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTG 49190 Query 172144 AGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTG 172203 | |||| || |||| | || ||||| || ||| | |||||||| | |||| Sbjct 49191 AACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTG 49250 Query 172204 CAGTATTCACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCAC 172263 | || || |||| ||||| |||||| ||||||| | |||||||||| || | Sbjct 49251 CTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGC 49310 Query 172264 CTTCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATA 172323 || |||||||| || || || ||||| | || | || | || || || || ||| Sbjct 49311 CTAGTTTTGGTGTAGCCGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATT 49370 Query 172324 TAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTAT 172383 || | || ||||||||||||||||| || || ||| |||| || | || | |||| Sbjct 49371 GGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTAT 49430 Query 172384 GTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTG 172443 | || || |||||||| || ||| | || || || | |||||| || Sbjct 49431 GCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGA---------------TG 49475 Query 172444 AAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTT 172503 | | | | ||| |||| ||| | || || | || || || | |||||||||| Sbjct 49476 --GTGATGGTGCAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTT 49529 Query 172504 ATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACA 172563 || ||| | || |||||| | || |||||||| || ||||| | || ||||| || | Sbjct 49530 ATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATA 49589 Query 172564 AAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTA 172623 || | | ||||| ||| ||||||| || ||||| || | ||| | |||| || Sbjct 49590 AACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTC 49649 Query 172624 TAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAA 172683 | || | || ||||| || | ||||| | || || ||||| || || ||||| || Sbjct 49650 TTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAAATCC 49709 Query 172684 GAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAG 172743 | ||||| ||||| || || ||||| || ||||| ||||| || |||||| | || |||| Sbjct 49710 GTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAG 49769 Query 172744 GTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAG 172803 |||| | || |||||| | || ||||| || ||||| ||| || | ||||| || | Sbjct 49770 GTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 49829 Query 172804 AAGTCTTGCCACGAGGCAACGCACTATAA 172832 | || | ||||| || ||||| || ||| Sbjct 49830 AGGTTCTACCACGTGGAAACGCTCTTTAA 49858 Score = 167 bits (184), Expect = 3e-36 Identities = 406/612 (66%), Gaps = 30/612 (5%) Strand=Plus/Plus Query 172218 ATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTC 172277 ||||| ||| | ||||| || ||| | | |||||||| || ||| |||||||| Sbjct 50704 ATCTTCCTACTTAATCCACTAAGTCGATCTGGCTGGTTCTTTGCGCCTAGTTTTGGTGTA 50763 Query 172278 GCAGCAATCTTTCGTTA----TATTTTATTCATACAGGGTTTCCACAATATAACTCTTAA 172333 | | || ||||| | |||||| | || |||||||| | | || | | || Sbjct 50764 GTCTCTATATTTCGATTCACCTATTTT-TCCA---AGGGTTTCATAATTGGAAAT-TGAA 50818 Query 172334 TCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACA 172393 ||||||||||||||||| || || ||| |||| || | || | ||||| | || || Sbjct 50819 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCACTATTCA 50878 Query 172394 TGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGAT 172453 |||||| || ||| | || || || | |||||| ||| ||| Sbjct 50879 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGG------------TGATGGTG---- 50922 Query 172454 TCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGAT 172513 ||| |||| ||| | || || | || || || | |||||||||||| ||| | Sbjct 50923 -CAAA-TACA---TTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGT 50977 Query 172514 TACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTT 172573 || |||||| | || |||||||| || ||||| | || ||||| || ||| | | || Sbjct 50978 CACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTT 51037 Query 172574 ACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGT 172633 ||| ||| ||||||| || ||||| || | ||| | |||| || | || | || Sbjct 51038 ACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGT 51097 Query 172634 AGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGA 172693 || || || | ||||| | || || |||||||| || || || || | | || || Sbjct 51098 CGGCCTAGCTTTGAACCTACGTGCCTATGACTTTGTTTCCCAGGAAATCTGTGTAGTGGA 51157 Query 172694 AGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGC 172753 ||| || || ||| | || ||||| ||||| || |||||| | || |||||||| | || Sbjct 51158 AGATCCGGAATTTAAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGC 51217 Query 172754 ATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCC 172813 ||| || || ||||| || ||||| ||| || | ||||| || || || | || Sbjct 51218 TTGGCTGGTGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTGTACC 51277 Query 172814 ACGAGGCAACGC 172825 ||| || ||||| Sbjct 51278 ACGTGGAAACGC 51289 >seq16 Length=29110212 Score = 542 bits (600), Expect = 3e-149 Identities = 724/1001 (72%), Gaps = 4/1001 (0%) Strand=Plus/Plus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||| | ||| |||| |||||| || || | ||| |||| ||||| ||||| || Sbjct 16535130 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 16535189 Query 170726 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 170784 |||||||| | ||| | || || || || ||| ||| | |||||||| |||||||| Sbjct 16535190 ATGATCCC-TACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCC 16535248 Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACA 170843 |||||| ||||| || || || | ||||| ||| | || ||| ||||| || || |||| Sbjct 16535249 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTT-TACGGAAACA 16535307 Query 170844 ACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCA 170903 | || || || ||||| | |||| |||| || || || || || || || || | Sbjct 16535308 ATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGA 16535367 Query 170904 TCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTA 170963 |||||||||| || | | || || ||| | |||||||| |||||||| | || || Sbjct 16535368 TCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTG 16535427 Query 170964 TTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACA 171023 || | ||||| | |||| | || || |||||| | |||||||||| | | Sbjct 16535428 TTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 16535487 Query 171024 GACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTG 171083 | || || ||| | |||||||| ||| ||||| ||||| ||||| | || || || Sbjct 16535488 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTG 16535547 Query 171084 CAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 171143 | || ||| | | |||||| | |||||||| || |||||||||||||| ||||| | Sbjct 16535548 CTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 16535607 Query 171144 TCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACC 171203 |||| ||||| |||||||| ||| | || ||||| || || |||||||| || ||||||| Sbjct 16535608 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 16535667 Query 171204 CCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACG 171263 | || || ||| ||||||||| ||| | ||||| || || || ||||| ||||| | Sbjct 16535668 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 16535727 Query 171264 GTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACG 171323 |||| | || || ||| | | ||||| || || || || || || | || | | Sbjct 16535728 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 16535787 Query 171324 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 171383 | || | ||||| |||||||||||||| || |||||||| |||||||| || || || | Sbjct 16535788 GTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 16535847 Query 171384 GTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCG 171443 | |||| |||||||| ||||| |||||||| |||||||| ||||| |||||| | | Sbjct 16535848 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 16535907 Query 171444 CTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCA 171503 | | | || ||||| || | ||||| || || | ||||| |||| ||||| |||| Sbjct 16535908 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 16535967 Query 171504 ACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAA 171563 |||| || || ||||| |||||||||||||| || ||| | ||| || | | Sbjct 16535968 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 16536027 Query 171564 CATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATG 171623 | |||| ||| || ||||| | || |||||||| |||||||||||||||||| | |||| Sbjct 16536028 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 16536087 Query 171624 CACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACA 171664 | ||||||||||| ||||||||||| ||| |||| || || Sbjct 16536088 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCA 16536128 >seq18 Length=20869551 Score = 423 bits (468), Expect = 2e-113 Identities = 548/757 (72%), Gaps = 0/757 (0%) Strand=Plus/Minus Query 170908 GGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTT 170967 |||||| || | | || || ||| | ||||||| |||||||| | || || || | Sbjct 2057535 GGAAGCTGCATCCGTTGATGAATGGCTACACAACGGTGGTCCTTATGAACTAATTGTTCT 2057476 Query 170968 CCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACT 171027 ||||| | |||| | || || |||||| | |||||||||| | | | || Sbjct 2057475 ACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 2057416 Query 171028 AGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGT 171087 || ||| | |||||||| ||| ||||| ||||| ||||| | | || ||| || Sbjct 2057415 GGGTATGCGTCCTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCGACTGCTGT 2057356 Query 171088 ATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTC 171147 ||| | | |||||| | |||||||| || |||||||||||||| ||||| ||||| Sbjct 2057355 TTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTC 2057296 Query 171148 AGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTT 171207 ||||| |||||||| ||| | || ||||| || || |||||||| || |||||||| || Sbjct 2057295 TGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATT 2057236 Query 171208 CCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTC 171267 || ||| ||||||||| ||| | ||||| || || || ||||| ||||| ||||| Sbjct 2057235 TCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC 2057176 Query 171268 TCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTA 171327 | || || ||| | | ||||| || || || || || || | || | || || Sbjct 2057175 CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTA 2057116 Query 171328 TAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAG 171387 | ||||| |||||||||||||| || |||||||| |||||||| || || || || | Sbjct 2057115 CAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCG 2057056 Query 171388 ATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGT 171447 ||| |||||||| ||||| |||||||| |||||||| ||||| |||||| | || | Sbjct 2057055 ATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGC 2056996 Query 171448 ATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCT 171507 | || ||||| || | ||||| || || | ||||| |||| ||||| |||||||| Sbjct 2056995 TTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCT 2056936 Query 171508 TAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACATG 171567 || || ||||| |||||||||||||| || ||| | ||| || | || || Sbjct 2056935 AAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTG 2056876 Query 171568 GGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACA 171627 || ||| || ||||| | || |||||||| |||||||||||||||||| | ||||| || Sbjct 2056875 GGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 2056816 Query 171628 CAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACA 171664 ||||||||| ||||||||||| ||| |||| || || Sbjct 2056815 CAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCA 2056779 Score = 250 bits (276), Expect = 3e-61 Identities = 255/333 (77%), Gaps = 0/333 (0%) Strand=Plus/Minus Query 171332 TTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTA 171391 ||||| |||||||||||||| || |||||||| |||||||| || || || || |||| Sbjct 2056466 TTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTG 2056407 Query 171392 ATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTC 171451 |||||||| ||||| |||||||| |||||||| ||||| |||||| | || | | Sbjct 2056406 ATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGG 2056347 Query 171452 CCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAAC 171511 || ||||| || | ||||| || || | ||||| |||| ||||| |||||||| || Sbjct 2056346 CCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAT 2056287 Query 171512 GGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACATGGGGA 171571 || ||||| |||||||||||||| || ||| | ||| || | || |||| Sbjct 2056286 GGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCT 2056227 Query 171572 GATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAAC 171631 ||| || ||||| | || |||||||| |||||||||||||||||| | ||||| |||||| Sbjct 2056226 GATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAAC 2056167 Query 171632 TTCCCACTAGACCTAGCATCTGCTGAGTCTACA 171664 ||||| ||||||||||| ||| |||| || || Sbjct 2056166 TTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCA 2056134 >seq4 Length=30110606 Score = 149 bits (164), Expect = 7e-31 Identities = 262/383 (68%), Gaps = 23/383 (6%) Strand=Plus/Minus Query 172219 TCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCG 172278 |||| ||||| |||||| ||||||| | |||||||||| || ||| |||||||| | Sbjct 15118832 TCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAG 15118773 Query 172279 CAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCAT 172338 |||| || ||||| | || | || | || || || || ||| || | || |||| Sbjct 15118772 CAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCAT 15118713 Query 172339 TTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTG 172398 ||||||||||||| || || ||| |||| || | || | ||||| || || ||||||| Sbjct 15118712 TTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTG 15118653 Query 172399 CAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAA-GATTCAA 172457 | || ||| | || || || | |||| || ||||| | | ||| Sbjct 15118652 CTACTGTAGAAAATACTTTATTTGAA------------------GATGGTAATGGTGCAA 15118611 Query 172458 TCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACT 172517 |||| ||| | || || | || || || | |||||||||||| ||| | || Sbjct 15118610 -ATACA---TTCTGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACC 15118555 Query 172518 GCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACAC 172577 |||||| | || |||||||| || ||||| | || ||||| || ||| | | ||||| Sbjct 15118554 GCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACAT 15118495 Query 172578 TTCCTTATGTTGTTCGTACCTGT 172600 ||| ||||||| || ||||| || Sbjct 15118494 TTCTTTATGTTATTTGTACCAGT 15118472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570003539467680