Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4 174 2e-38 seq9 167 3e-36 seq12 109 7e-19 seq10 109 7e-19 seq11 105 8e-18 seq16 98.7 1e-15 seq7 95.1 2e-14 >seq4 Length=30110606 Score = 174 bits (192), Expect = 2e-38 Identities = 406/604 (67%), Gaps = 9/604 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| ||||| ||||| | || |||||||| || || || || Sbjct 6029438 CACGCGAAGTCGCAGTGTAGACCTTCGTCACGCGAGATCAGTTCGTTTGAGAAAGTAAGG 6029497 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || || || || |||||||| || || || ||| ||| || |||||| Sbjct 6029498 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATTGAGCAGAAGCTTCCGGAGAAGAAG 6029557 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGCTGTCATGTAT 33482 || ||||| || ||| || || || | || || | | | | | | | | || Sbjct 6029558 ATACCTTCGACGCAAGCGAAAGCTATGATTCGTTCAGCGAAGGTCTGAGATC-CTTCGAT 6029616 Query 33483 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33542 ||| || ||||| | || ||||| || ||||| || ||||| || || || Sbjct 6029617 CCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCGGAA 6029676 Query 33543 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33602 ||||| || | | || || | ||||| | |||||||||| | ||||| ||||| || Sbjct 6029677 GAGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTATCGAGGAGGAGACTGTACATCTC 6029736 Query 33603 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 33662 || || ||||| ||||| || ||||| ||||||||||| | ||||| | | || Sbjct 6029737 GGAGTGGATGTTCTCAATCGCGATCTGGAATCCGTAGAAGGCACGCGCCTCCGAGACTTG 6029796 Query 33663 TACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 33721 || || | ||| || ||| || | ||| || ||| |||||||| || |||| Sbjct 6029797 GACATC-GGACATGAAACGTGAGGCGAGATTCTCTAGCACGATTCCGTCTGACGCGGCAA 6029855 Query 33722 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAG---TTTATTCCAA 33777 | || || | || ||||| || || | |||| | | || | || || | ||| Sbjct 6029856 AGAAGGCGAGGACGTGTTTGATGAAGTGGCGTTCGCCGTCGT-TGAGGCTGTTCTCCCAG 6029914 Query 33778 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33837 || | | |||| ||||| |||||||||||| | ||||| || ||||| || || || Sbjct 6029915 TCGCGGTTGTCTTGAGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTC 6029974 Query 33838 TTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 || ||||| | |||||| | || ||||||||||| ||| ||||| | ||| || Sbjct 6029975 TTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGGGGTT 6030034 Query 33898 GGTG 33901 |||| Sbjct 6030035 GGTG 6030038 >seq9 Length=38094978 Score = 167 bits (184), Expect = 3e-36 Identities = 406/607 (67%), Gaps = 15/607 (2%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| ||||| ||||| | || |||||||| || || || || Sbjct 5073822 CAAGCGAAGTCGCAGTGTAGACCTTCGTCACGCGAGATCAGTTCGTTTGAGAAAGTAAGG 5073881 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || || || || |||||||| || || || ||| ||| || |||||| Sbjct 5073882 CCAGGCATGAGACCTCGTTTCTTAAGCCAGAAGATTGAGCAGAAGCTTCCGGAGAAGAAG 5073941 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT- 33480 || ||||| || ||| || || || | || || | | | || || || Sbjct 5073942 ATACCTTCGACGCAAGCGAAAGCGATGATTCGTTCAGCGAA----GGTTTGAGATCCGTC 5073997 Query 33481 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| | |||||| | ||| ||||| || ||||| || ||||| || || Sbjct 5073998 GATCCATGTCATAGCCCACTGGGCTTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCG 5074057 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 ||||||| || | | || ||| | ||||| | |||||||||| | ||||| ||||| Sbjct 5074058 GAAGAGATGGTCTCTCTCTTTATTGTCTTTGATGTAAGTATCGAGGAGGAGACTGTACAT 5074117 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 || || || || || ||||| || ||||| |||||||||||| | ||||| | | Sbjct 5074118 CTCGGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCCTCCGAGAC 5074177 Query 33660 CTGTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTG 33718 || || || | ||| || || || | ||| || ||| |||||||| || | Sbjct 5074178 TTGGACATC-GGACATGAAACGGGAAGCGAGATTCTCTAACACGATTCCGTCTGACGCGG 5074236 Query 33719 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAG---TTTATTC 33774 | || || || | || ||||| || || | |||| | | || | || || | | Sbjct 5074237 CGAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGTTCGCCGTCGT-TGAGGCTGTTTTCC 5074295 Query 33775 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33834 || || | | |||| |||| |||||||||||| | ||||| || ||||| || || Sbjct 5074296 CAGTCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCAGTCCAGAAGGATGCTTCGGCT 5074355 Query 33835 TTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGA 33894 || || ||||| | |||||| | || ||||||||||| ||| ||||| | ||| Sbjct 5074356 TTCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGGG 5074415 Query 33895 TTTGGTG 33901 |||||| Sbjct 5074416 GTTGGTG 5074422 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| ||||| | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 32305348 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 32305289 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| | ||||| || || ||||| |||||| | |||||||||||| |||||| Sbjct 32305288 ATTAGATGTTCCATTTGTGCCACGAATATAACTTCCAGTTGCACGAATATTATGAATTGA 32305229 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| || ||||| || ||| || | || || ||| | || ||||| || Sbjct 32305228 AACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTTTCATATAT 32305169 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 || || ||||||||||| ||||| | ||||| ||||| Sbjct 32305168 GCCGTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 32305127 >seq12 Length=33044737 Score = 109 bits (120), Expect = 7e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| || || | |||| ||| || | ||| | || | || |||||||| |||||| Sbjct 564399 TCCTCCTTGGTCAACATATCGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 564340 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| ||||| || || || || |||||| | ||||| || || || ||| Sbjct 564339 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 564280 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 || ||| || ||||| || | ||| || | || || ||| ||||||||||| || Sbjct 564279 TACACCAATACCCCCAGCTAATTTGCTTATAACAGCACACTCTTTCAACGTGTCATATAT 564220 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 ||||| ||||||||||| ||||| || ||||| |||||| Sbjct 564219 TCCCTCGATGCTATCATCCTTCATGCAAATCAGAAAGCAGCTA 564177 >seq10 Length=25316904 Score = 109 bits (120), Expect = 7e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| || || | || | ||| || | ||| |||| | || |||||||| |||||| Sbjct 542226 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAAAACCCGCAGCATTGGAACAATACC 542167 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| ||||| || || || || |||||| | ||||| || || || ||| Sbjct 542166 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 542107 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 || ||| || |||||||| | ||| || | || || ||| ||||||||||| || Sbjct 542106 TACACCAATACCCCCTGCTAATTTGCTTATAACAGCACACTCTTTCAACGTGTCATATAT 542047 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 || || ||||||||||| ||||| || ||||| |||||| Sbjct 542046 TCCTTCGATGCTATCATCCTTCATGCAAACCAGAAAGCAGCTA 542004 >seq11 Length=49703607 Score = 105 bits (116), Expect = 8e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| || || | ||| | ||| || | ||| | || | || |||||||| |||||| Sbjct 646820 TCCTCCTTGGTCAACGTAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATACC 646761 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| ||||| || || || || |||||| | ||||| || || || ||| Sbjct 646760 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 646701 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 || ||| || || ||||| | ||| || | || || ||| ||||||||||| || Sbjct 646700 TACACCAATACCGCCTGCTAATTTGCTTATAACAGCACACTCTTTCAACGTGTCATAAAT 646641 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 ||||| ||||||||||| ||||| || | ||| |||||| Sbjct 646640 TCCCTCGATGCTATCATCCTTCATGCAAATCAAAAAGCAGCTA 646598 >seq16 Length=29110212 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| ||||| | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 22277660 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 22277601 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| | ||||| || || || || |||||| | |||||||||||| |||||| Sbjct 22277600 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAATTGA 22277541 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| || ||||| || ||| || | || || ||| | || ||||| || Sbjct 22277540 AACACCAATACCCCCAGCTGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 22277481 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 || || ||||||||||| ||||| | ||||| ||||| Sbjct 22277480 GCCGTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 22277439 >seq7 Length=33617777 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| ||||| | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 26389526 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 26389467 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| | ||||| || || || || |||||| | ||||||||||| |||||| Sbjct 26389466 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTGTGAATTGA 26389407 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| || ||||| || ||| || | || || ||| | || ||||| || Sbjct 26389406 AACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 26389347 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 || || ||||||||||| ||||| | ||||| ||||| Sbjct 26389346 GCCGTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 26389305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622657436109920