Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq12 116 4e-21 seq10 107 2e-18 seq14 104 2e-17 seq11 102 8e-17 seq3 102 8e-17 seq13 98.7 1e-15 seq5 91.5 1e-13 seq6 87.8 2e-12 seq4 87.8 2e-12 seq20 84.2 2e-11 seq8 84.2 2e-11 seq7 82.4 7e-11 >seq12 Length=33044737 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| | || |||||| | || || | ||| | ||| Sbjct 24358135 ATGCAAATATTTGTGAAAACCCTCACCGGAAAAACCATTACTCTAGAAGTTGAAAGCTCT 24358076 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| |||||| ||||| |||||||||||||| || ||| Sbjct 24358075 GACACCATTGACAATGTCAAGGCGAAGATTCAAGACAAGGAAGGGATACCTCCTGACCAA 24358016 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || ||||| || | || ||||| ||||| || |||| | | ||| | ||| || ||||| Sbjct 24358015 CAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCG-AACCTTAGCAGATTATAA 24357957 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| || ||||| || ||| | ||| |||| || | || ||||| || Sbjct 24357956 CATCCAGAAAGAGTCAACTCTGCATTTGGTTCTTCGTCTGAGAGGTGG 24357909 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | || ||||| |||||||| |||| | ||| Sbjct 2892198 ATGCAAATCTTCGTTAAGACTCTCACCGGAAAGACGATCACCCTCGAGGTGGAAAGCTCT 2892139 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | |||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 2892138 GACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGTATCCCTCCGGATCAG 2892079 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| || || | | ||| || || || ||||| | || | | | ||||| ||| Sbjct 2892078 CAAAGGCTTATCTTTGCCGGTAAGCAGCTAGAAGACGGCAGGACCTTGGCTGACTACAAC 2892019 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || || |||||| | || ||||||| || ||| | || || Sbjct 2892018 ATCCAGAAGGAGTCTACTCTTCACTTGGTCCTCAGGCTTCGTGGTGG 2891972 >seq10 Length=25316904 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||||||||| | || |||||| | || || | ||| | ||| Sbjct 18593961 ATGCAAATATTTGTAAAAACCCTCACCGGAAAAACTATTACTCTAGAAGTTGAAAGCTCT 18593902 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| ||||| ||||| ||||| || ||||| || ||| Sbjct 18593901 GACACCATTGACAATGTCAAGGCGAAGATCCAAGACAAGGAAGGAATCCCTCCGGACCAA 18593842 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || ||||| || | || ||||| ||||| || |||| | ||| | | ||| || ||||| Sbjct 18593841 CAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGAACCCT-AGCAGATTATAA 18593783 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| || ||||| || ||| | ||| |||| || | || ||||| || Sbjct 18593782 CATCCAGAAAGAGTCAACTCTGCATTTGGTTCTTCGTCTGAGAGGCGG 18593735 >seq14 Length=31758599 Score = 104 bits (114), Expect = 2e-17 Identities = 114/148 (77%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 |||||||| |||||||| || |||||||| || | || | | || |||||||||||| Sbjct 16847701 GACAAAGAGGGGATACCACCTGATCAACAGAGGTTGATCTTTGCTGGTAAACAACTCGAA 16847642 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| | | ||||| ||| ||||| ||||| || ||||| |||||| | || ||||| | Sbjct 16847641 GATGGTCG-AACGTTAGCTGACTACAACATCCAGAAAGAGTCTACTCTTCACTTGGTCTT 16847583 Query 26981 GAGACTTAGAGGAGGAAAAATATGATTA 27008 ||| ||||| || || | |||||||| Sbjct 16847582 GAGGCTTAGGGGTGG--TACTATGATTA 16847557 >seq11 Length=49703607 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||||||||| | || |||||| | || || | ||| | ||| Sbjct 21796017 ATGCAAATATTTGTAAAAACCCTCACCGGAAAAACCATTACTCTAGAAGTTGAAAGCTCT 21795958 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| ||||| ||||| ||||| || ||||| || ||| Sbjct 21795957 GACACCATTGACAATGTCAAGGCGAAGATCCAAGACAAGGAAGGAATCCCTCCGGACCAA 21795898 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || ||||| || | || ||||| ||||| || |||| | | ||| | ||| || ||||| Sbjct 21795897 CAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCG-AACCTTAGCAGATTATAA 21795839 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| || |||| || ||| | ||| |||| || | || ||||| || Sbjct 21795838 CATCCAGAAAGGGTCAACTCTGCATTTGGTTCTTCGTCTGAGAGGTGG 21795791 >seq3 Length=28500605 Score = 102 bits (112), Expect = 8e-17 Identities = 105/135 (78%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 |||||||| |||||||| || |||||||| || | || | | || |||||||||||| Sbjct 15299119 GACAAAGAGGGGATACCACCTGATCAACAGAGGTTGATCTTTGCTGGTAAACAACTCGAA 15299060 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| | | ||||| ||| ||||| ||||| || ||||| |||||| | || ||||| | Sbjct 15299059 GATGGTCG-AACGTTAGCTGACTACAACATCCAGAAAGAGTCTACTCTTCACTTGGTCTT 15299001 Query 26981 GAGACTTAGAGGAGG 26995 ||| ||||| || || Sbjct 15299000 GAGGCTTAGGGGTGG 15298986 >seq13 Length=24101694 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || |||||| | ||||| || | |||||| | || | || | Sbjct 9157675 ATGCAAATTTTCGTGAAAACACTCACTGGTAAGACCATCACCCTTGAGGTCGAGAGCTCC 9157616 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || |||||| ||||| ||||| || ||||| ||||| Sbjct 9157615 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 9157556 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | || | || ||| ||||| |||||||||| | | | | || || ||| Sbjct 9157555 CAAAGATTGATCTTCGCCGGTAAACAGCTCGAAGATGGCCGCACCTTGGCTGATTACAAC 9157496 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| |||||||| || |||| |||| || Sbjct 9157495 ATTCAGAAAGAATCAACCCTCCACTTGGTTCT 9157464 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || |||||| | ||||| || | ||||| |||| | || Sbjct 970456 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTTTCGAGGTTGAGAGCTCT 970397 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || |||||| ||||| ||||| |||||||| || || Sbjct 970396 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGTATACCTCCGGACCAG 970337 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||| | || | || ||| ||||| || ||||||| | | | | || || || ||| Sbjct 970336 CAGAGATTGATCTTCGCCGGTAAACAGCTTGAAGATGGTCGTACCTTCGTTGATTACAAC 970277 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || ||| |||| |||| || Sbjct 970276 ATCCAGAAGGAGTCGACTCTCCACTTGGTTCT 970245 >seq5 Length=34971402 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 |||||||| || ||||| || ||||||||||| || || | | || || ||||||||| Sbjct 7374672 GACAAAGAGGGTATACCACCGGATCAACAAAGGCTGATATTTGCTGGTAAGCAACTCGAA 7374613 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| | || | ||| || || ||||| || ||||| |||||| | ||||| ||| | Sbjct 7374612 GATG-GACGGACCTTAGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTT 7374554 Query 26981 GAGACTTAGAGGAGGAA 26997 ||| || ||||| |||| Sbjct 7374553 GAGGCTCAGAGGTGGAA 7374537 >seq6 Length=26391736 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 |||||||| || ||||| || ||||||||||| || || | | || || ||||||||| Sbjct 19297608 GACAAAGAGGGTATACCACCTGATCAACAAAGGCTGATATTTGCTGGTAAGCAACTCGAA 19297667 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| | || | ||| || || ||||| || ||||| |||||| | ||||| ||| | Sbjct 19297668 GATG-GACGGACCTTAGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTT 19297726 Query 26981 GAGACTTAGAGGAGGAA 26997 ||| || || || |||| Sbjct 19297727 GAGGCTCAGGGGTGGAA 19297743 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/221 (69%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 26762 AAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAG 26820 ||| ||| ||||| | || || ||||| |||| || || ||||||| |||| | | Sbjct 25942756 AAAGAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACACTCGAGGTGG 25942815 Query 26821 AATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTC 26880 | ||| ||||||||||| | || || ||||| ||||| ||||| || || | Sbjct 25942816 AGTCATCTGACACCATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAAGGAATCCCAC 25942875 Query 26881 CCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC- 26939 | || || || || | |||| || ||| || || ||||| || | || ||| | ||| Sbjct 25942876 CGGACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAGGACGGAAG-AACCTTAGCG 25942934 Query 26940 GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| ||||| || || ||||| || | || || ||||| Sbjct 25942935 GACTACAACATCCAGAAGGAATCAACGCTTCACCTTGTCCT 25942975 >seq4 Length=30110606 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 |||||||| || ||||| || ||||||||||| || || | | || || ||||||||| Sbjct 23094797 GACAAAGAGGGTATACCACCTGATCAACAAAGGCTGATATTTGCTGGTAAGCAACTCGAA 23094856 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| | || | ||| || || ||||| || ||||| |||||| | ||||| ||| | Sbjct 23094857 GATGGCCG-GACCTTAGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTT 23094915 Query 26981 GAGACTTAGAGGAGGAA 26997 ||| || || || |||| Sbjct 23094916 GAGGCTCAGGGGTGGAA 23094932 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/221 (69%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 26762 AAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAG 26820 ||| ||| ||||| | || || ||||| |||| || || ||||||| |||| | | Sbjct 29684485 AAAGAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACACTCGAGGTGG 29684544 Query 26821 AATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTC 26880 | ||| ||||||||||| | || || ||||| ||||| ||||| || || | Sbjct 29684545 AGTCATCTGACACCATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAAGGAATCCCAC 29684604 Query 26881 CCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC- 26939 | || || || || | |||| || ||| || || ||||| || | || ||| | ||| Sbjct 29684605 CGGACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAGGACGGAAG-AACCTTAGCG 29684663 Query 26940 GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| ||||| || || ||||| || | || || ||||| Sbjct 29684664 GACTACAACATCCAGAAGGAATCAACGCTTCACCTTGTCCT 29684704 >seq20 Length=30099736 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAAA 26827 ||||| | ||||| || || ||||||| || | ||||| | || | || | | | Sbjct 11036405 ATGCAGATTTTTGTGAAGACCCTAACTGGCAAGACTATCACTTTGGAGGTTGAGAGCTCA 11036346 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || || | ||||| ||||||| ||||| |||||||| || || ||||| Sbjct 11036345 -GACACTATTGATAACGTCAAGGCAAAGATTCAAGACAAGGAAGGGATCCCACCAGATCA 11036287 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || |||||||| | | || ||||| || ||||| | | | | | ||||| || Sbjct 11036286 GCAGAGACTCATATTTGCTGGGAAACAGCTTGAAGACGGACGCACCCTTGCTGACTACAA 11036227 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||||||| || ||||| ||||||| || || Sbjct 11036226 CATTCAAAAGGAGTCTACCCTCCATCTTGTGCT 11036194 >seq8 Length=27720346 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || || ||||| ||| | |||||| |||| | || Sbjct 8687693 ATGCAAATCTTTGTGAAGACGTTGACTGGCAAAACCATCACCCTCGAGGTTGAGAGTTCG 8687752 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | || ||| |||||| || ||||||||||| ||||| || || Sbjct 8687753 GATACTATTGACAATGTTAAAGCTAAGATTCAGGATAAAGAAGGGATTCCTCCGGACCAG 8687812 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || || || || | | ||| || || || || |||| | | ||| ||| ||||| || Sbjct 8687813 CAGAGGCTTATCTTTGCCGGTAAGCAGCTTGAGGATGGTCG-CACGCTAGCTGACTACAA 8687871 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||| |||||| |||| |||| || | || ||||| || Sbjct 8687872 TATCCAGAAAGAGTCTACTCTCCACTTGGTGCTTCGTCTCAGAGGTGG 8687919 >seq7 Length=33617777 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || |||| ||| | || | || ||| Sbjct 664402 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGTCA 664343 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | || ||| ||||| ||||| |||||||| ||||| || Sbjct 664342 TCCGACACCATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGGATCCCTCCGGAC 664283 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | | |||| || ||| || || ||||| || | | | || |||||| Sbjct 664282 CAGCAGCGTTTGATTTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACTCTCGCCGACTAC 664223 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || ||||| || | ||||| || || Sbjct 664222 AACATCCAGAAGGAATCGACGCTTCATCTCGTGCT 664188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478439750184640