Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq11 122 2e-22 seq12 113 1e-19 seq7 111 4e-19 seq10 109 1e-18 seq19 102 2e-16 seq16 102 2e-16 seq1 102 2e-16 seq15 91.5 4e-13 seq9 89.7 1e-12 seq4 84.2 6e-11 >seq11 Length=49703607 Score = 122 bits (134), Expect = 2e-22 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||||||| ||| ||||||||| || | |||||| | || | |||||| |||| | Sbjct 646617 ATGAAGGATGATAGCATCGAGGGAATTTATGACACGTTGAAAGAGTGTGCTGTTATAAGC 646676 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || |||||||| ||||||||||| | ||||| | ||||| || | | |||||||| Sbjct 646677 AAATTAGCAGGCGGTATTGGTGTATCAGTTCACAACATCCGTGCAACTGGA-AGTTACAT 646735 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| |||||| ||| || ||||| | ||||| ||||| || || || | |||| Sbjct 646736 TCGTGGCACAAATGGAGCATCTAATGGTATTGTTCCAATGCTGCGGGTATTCAATGATAC 646795 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||| | ||||| ||||| || ||||| ||| | ||||| Sbjct 646796 TGCTCGTTACGTTGACCAAGGAGGAGGCAAGAGAAAAGG 646834 Score = 102 bits (112), Expect = 2e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| ||||| || | | | ||| ||||||||||| | || ||||| Sbjct 3083083 ATGGCACTTCCTCCATGCCA-CATGTTTGCACAGTTTTATGTTGCAAATGGAGAACTTTC 3083141 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||| |||||||||||||| || || ||||| ||||| ||||| |||||||| ||||| Sbjct 3083142 ATGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTCGGTGTACCGTTTAACATTGCCTC 3083201 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCA 111820 ||| | || ||||| ||| | ||||||| Sbjct 3083202 ATACTCCCTTCTTACATGCATTCTCGCTCA 3083231 Score = 102 bits (112), Expect = 2e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| ||||| || | | | ||| ||||||||||| | || ||||| Sbjct 3083647 ATGGCACTTCCTCCATGCCA-CATGTTTGCACAGTTTTATGTTGCAAATGGAGAACTTTC 3083705 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||| |||||||||||||| || || ||||| ||||| ||||| |||||||| ||||| Sbjct 3083706 ATGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTCGGTGTACCGTTTAACATTGCCTC 3083765 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCA 111820 ||| | || ||||| ||| | ||||||| Sbjct 3083766 ATACTCCCTTCTTACATGCATTCTCGCTCA 3083795 >seq12 Length=33044737 Score = 113 bits (124), Expect = 1e-19 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||||||| ||| ||||||||| || | |||||| | || | |||||| |||| | Sbjct 564196 ATGAAGGATGATAGCATCGAGGGAATATATGACACGTTGAAAGAGTGTGCTGTTATAAGC 564255 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || || || || ||||||||||| | ||||| | ||||| || | | |||||||| Sbjct 564256 AAATTAGCTGGGGGTATTGGTGTATCAGTTCACAACATCCGTGCAACTGGA-AGTTACAT 564314 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| |||||| ||| || ||||| | ||||| ||||| ||||| || | |||| Sbjct 564315 TCGTGGCACAAATGGAGCATCTAATGGTATTGTTCCAATGCTGCGTGTATTCAATGATAC 564374 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||| | || || ||||| || ||||| ||| | ||||| Sbjct 564375 TGCTCGATATGTTGACCAAGGAGGAGGCAAGAGAAAAGG 564413 Score = 87.8 bits (96), Expect = 5e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| ||||| | | | | ||| ||||||||||| | || ||||| Sbjct 2862523 ATGGCACTTCCTCCATGCGA-CATGTTTGCACAGTTTTATGTTGCAAATGGAGAACTTTC 2862581 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||| |||||||||||||| || || ||||| || || ||||| |||||||| ||||| Sbjct 2862582 ATGTCAAATGTATCAGCGCTCAGCCGATATGGGGCTCGGTGTACCGTTTAACATTGCCTC 2862641 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCA 111820 ||| | || || || ||| | ||||||| Sbjct 2862642 ATACTCCCTTCTCACATGCATTCTCGCTCA 2862671 >seq7 Length=33617777 Score = 111 bits (122), Expect = 4e-19 Identities = 159/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||| || || || | ||| ||||| || | |||||| |||| | Sbjct 26389323 ATGAAAGATGATAGCATTGACGGCATATATGAAACACTCAAAGAGTGTGCTGTTATAAGC 26389382 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTTACAT 363740 || ||| || || |||||||| || || |||||| |||||||| | | | |||||||| Sbjct 26389383 AAATCTGCTGGGGGTATTGGTGTTTCAATTCACAATATTCGTGCAACTGGA-AGTTACAT 26389441 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| |||||| ||| || ||||| | ||||| ||||| ||||| || | |||| Sbjct 26389442 TCGTGGCACAAATGGAACATCTAATGGTATTGTTCCAATGCTGCGTGTATTCAATGATAC 26389501 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || || || || ||||| ||| | |||||| Sbjct 26389502 TGCTCGTTATGTTGATCAAGGAGGAGGCAAGAG-AAAGGG 26389540 >seq10 Length=25316904 Score = 109 bits (120), Expect = 1e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||||||| ||| |||||| || || | |||||| | || | |||||| |||| | Sbjct 542023 ATGAAGGATGATAGCATCGAAGGAATATATGACACGTTGAAAGAGTGTGCTGTTATAAGC 542082 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || ||||| || ||||||||||| | ||||| | ||||| || | | |||||||| Sbjct 542083 AAATTAGCAGGGGGTATTGGTGTATCAGTTCACAACATCCGTGCAACTGGA-AGTTACAT 542141 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| |||||| ||| || ||||| | ||||| ||||| || || || | |||| Sbjct 542142 TCGTGGCACAAATGGAGCATCTAATGGTATTGTTCCAATGCTGCGGGTTTTCAATGATAC 542201 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||| | || || ||||| || ||||| ||| | ||||| Sbjct 542202 TGCTCGTTATGTTGACCAAGGAGGAGGCAAGAGGAAAGG 542240 Score = 102 bits (112), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111592 ATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGA 111651 |||| ||| | | || ||||| || || | ||| || || |||||| || |||| Sbjct 2742221 ATGTAATTAACAAGATCAAGAATAATCCTGATGATCGACGAATCATTATGTCCGCTTGGA 2742280 Query 111652 ACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTAT 111710 | || || |||| ||||||||||| ||||| || | | | ||| ||||||||| Sbjct 2742281 ATCCTCCTGATCTGGAGTTGATGGCACTTCCTCCATGCCA-CATGTTTGCACAGTTTTAT 2742339 Query 111711 GTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGT 111770 || | || |||||||| |||||||||||||| || || ||||| ||||| || Sbjct 2742340 GTTGCAAATGGAGAACTTTCATGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTCCGT 2742399 Query 111771 GTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 || |||||||| ||||| ||| | || ||||| ||| | ||||||| Sbjct 2742400 GTACCGTTTAACATTGCCTCATACTCCCTTCTTACATGCATTCTCGCTCA 2742449 >seq19 Length=26736940 Score = 102 bits (112), Expect = 2e-16 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| ||||| || ||| || || || |||||||||||||| || || || || Sbjct 22319801 CAGTTCTATGTGGCAGAAGGGGAACTCTCGTGTCAAATGTATCAGCGTTCAGCAGACATG 22319742 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || |||||||| |||||||| ||||| ||| | || ||||||||| | ||||||| Sbjct 22319741 GGACTTGGTGTGCCGTTTAACATTGCGTCCTACTCTCTTCTTACTTGCATGCTCGCTCAC 22319682 Query 111822 TTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACA 111881 | ||||| || ||||| || || || ||||| || ||||| ||||| |||| | Sbjct 22319681 GTGTGCAATCTTGTTCCTGGTGATTTTATCCATGTTATAGGGGATGCTCATGTGTACAGA 22319622 Query 111882 A 111882 | Sbjct 22319621 A 22319621 >seq16 Length=29110212 Score = 102 bits (112), Expect = 2e-16 Identities = 157/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||| || || || | ||| ||||| || | |||||| |||| | Sbjct 22277457 ATGAAAGATGATAGCATTGACGGCATATATGAAACACTCAAAGAGTGTGCTGTTATAAGC 22277516 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTTACAT 363740 || || || || |||||||| || || || ||| |||||||| | | | |||||||| Sbjct 22277517 AAATCAGCTGGGGGTATTGGTGTTTCAATTCATAATATTCGTGCAACTGGA-AGTTACAT 22277575 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| |||||| ||| || ||||| | ||||| ||||| ||||| || | |||| Sbjct 22277576 TCGTGGCACAAATGGAACATCTAATGGTATTGTTCCAATGCTGCGTGTATTCAATGATAC 22277635 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || || || || ||||| ||| | |||||| Sbjct 22277636 TGCTCGTTATGTTGATCAAGGAGGAGGCAAGAG-AAAGGG 22277674 >seq1 Length=23241285 Score = 102 bits (112), Expect = 2e-16 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| ||||| || ||| || || || |||||||||||||| || || || || Sbjct 16357491 CAGTTCTATGTGGCAGATGGGGAACTCTCCTGTCAAATGTATCAGCGTTCAGCAGACATG 16357550 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || |||||||| |||||||| ||||| ||| | || ||||||||| | ||||||| Sbjct 16357551 GGCCTTGGTGTGCCGTTTAACATTGCGTCCTACTCTCTTCTTACTTGCATGCTCGCTCAC 16357610 Query 111822 TTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACA 111881 | ||||| || ||||| || || || ||||| || ||||| ||||| |||| | Sbjct 16357611 GTGTGCAATCTTGTTCCTGGTGATTTTATCCATGTTATAGGGGATGCTCATGTGTACAGA 16357670 Query 111882 A 111882 | Sbjct 16357671 A 16357671 >seq15 Length=30521352 Score = 91.5 bits (100), Expect = 4e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 111703 AGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTG 111762 |||| ||||| || ||| || || || |||||||||||||| || || || || | Sbjct 24339787 AGTTCTATGTGGCAGAAGGGGAACTCTCGTGTCAAATGTATCAGCGTTCAGCAGACATGG 24339728 Query 111763 GTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATT 111822 | |||||||| || ||||| ||||| ||| | || ||||||||| | |||||| Sbjct 24339727 GCCTTGGTGTGCCCTTTAACATTGCGTCCTACTCTCTTCTTACTTGCATGCTCGCTCGCG 24339668 Query 111823 TTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAA 111882 | ||||| || ||||| || || || ||||| || ||||| ||||| |||| || Sbjct 24339667 TGTGCAATCTTGTTCCTGGTGATTTTATCCATGTTATAGGGGATGCTCATGTGTACAGAA 24339608 >seq9 Length=38094978 Score = 89.7 bits (98), Expect = 1e-12 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 22857 TAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAA 22916 ||| || ||||| |||||||||||||| || ||| |||| ||||| || |||||||| || Sbjct 5073611 TAACCCTTTTGATTGGATGGAACTTATCTCGCTTCAAGGGAAGACTAACTTCTTCGAGAA 5073552 Query 22917 AAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 | | ||||| || |||||||| || ||||||| Sbjct 5073551 ACGCGTTGGCGATTACCAAAAGGCTTCTGTTATG 5073518 >seq4 Length=30110606 Score = 84.2 bits (92), Expect = 6e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 22857 TAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAA 22916 ||| || ||||| |||||||||||||| || ||| |||| ||||| || |||||||| || Sbjct 6029227 TAACCCTTTTGATTGGATGGAACTTATCTCGCTTCAAGGGAAGACTAACTTCTTCGAGAA 6029168 Query 22917 AAGAGTTGGTGAATACCAAAAAGC 22940 | | ||||| || |||||||| || Sbjct 6029167 ACGCGTTGGCGATTACCAAAAGGC 6029144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302732188699784