Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq12 96.9 3e-15 seq20 93.3 4e-14 seq11 87.8 2e-12 seq10 87.8 2e-12 seq13 84.2 2e-11 seq8 84.2 2e-11 >seq12 Length=33044737 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| ||||| |||||||||||||| | ||| || | Sbjct 24358135 ATGCAAATATTTGTGAAAACCCTCACCGGAAAAACCATTACTCTAGAAGTTGAAAGCTCT 24358076 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || || ||| || || ||||| | || ||| || Sbjct 24358075 GACACCATTG-ACAATGTCAAGGCGAAGATTCAAGACAAGGAAGGGATACCTCCTGACCA 24358017 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || |||||||| | || ||||| ||| | || |||| |||| | || |||||||| Sbjct 24358016 ACAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGAACCTTAGCAGATTATAA 24357957 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 ||| || |||||||| ||| | ||| |||| Sbjct 24357956 CATCCAGAAAGAGTCAACTCTGCATTTGGT 24357927 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || || || || ||||| ||||| || || ||| |||| ||| | Sbjct 2892198 ATGCAAATCTTCGTTAAGACTCTCACCGGAAAGACGATCACCCTCGAGGTGGAAAGCTCT 2892139 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | |||| || ||| || || || || ||||| |||| ||||| Sbjct 2892138 GACACCATCG-ACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGTATCCCTCCGGATCA 2892080 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| ||||| | ||| || || || ||||||| | || ||| |||| || || || Sbjct 2892079 GCAAAGGCTTATCTTTGCCGGTAAGCAGCTAGAAGACGGCAGGACCTTGGCTGACTACAA 2892020 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 ||| || || ||||||||| | || |||| Sbjct 2892019 CATCCAGAAGGAGTCTACTCTTCACTTGGT 2891990 >seq20 Length=30099736 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 115279 ATTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA 115338 |||| | ||||| || ||||| || || ||||| ||||| || || ||| |||| ||| Sbjct 5698055 ATTACAGATGCAGATCTTTGTTAAGACTCTCACCGGAAAGACAATCACCCTCGAGGTGGA 5698114 Query 115339 GTCCAGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCG 115397 | ||||| | | |||| || ||| || || ||||| ||||| |||| Sbjct 5698115 AAGCTCTGACACAATCG-ACAACGTCAAAGCCAAGATCCAGGATAAGGAAGGTATCCCTC 5698173 Query 115398 TTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCG 115457 ||||||||||| ||||| | ||| || || || ||||||||| | ||| |||| | Sbjct 5698174 CAGATCAGCAAAGGCTTATCTTTGCCGGTAAGCAGCTAGAAGATGGCCGTACCTTGGCTG 5698233 Query 115458 ATTATAACATTCAAAAAGAGTCTAC 115482 | || |||||||| || |||||||| Sbjct 5698234 ACTACAACATTCAGAAGGAGTCTAC 5698258 >seq11 Length=49703607 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| ||||| |||||||||||||| | ||| || | Sbjct 21796017 ATGCAAATATTTGTAAAAACCCTCACCGGAAAAACCATTACTCTAGAAGTTGAAAGCTCT 21795958 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || || || || || ||||| |||| || || Sbjct 21795957 GACACCATTG-ACAATGTCAAGGCGAAGATCCAAGACAAGGAAGGAATCCCTCCGGACCA 21795899 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || |||||||| | || ||||| ||| | || |||| |||| | || |||||||| Sbjct 21795898 ACAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGAACCTTAGCAGATTATAA 21795839 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 ||| || |||| ||| ||| | ||| |||| Sbjct 21795838 CATCCAGAAAGGGTCAACTCTGCATTTGGT 21795809 >seq10 Length=25316904 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| ||||| |||||||| ||||| | ||| || | Sbjct 18593961 ATGCAAATATTTGTAAAAACCCTCACCGGAAAAACTATTACTCTAGAAGTTGAAAGCTCT 18593902 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || || || || || ||||| |||| || || Sbjct 18593901 GACACCATTG-ACAATGTCAAGGCGAAGATCCAAGACAAGGAAGGAATCCCTCCGGACCA 18593843 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || |||||||| | || ||||| ||| | || |||| |||| | || |||||||| Sbjct 18593842 ACAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGAACCCTAGCAGATTATAA 18593783 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 ||| || |||||||| ||| | ||| |||| Sbjct 18593782 CATCCAGAAAGAGTCAACTCTGCATTTGGT 18593753 >seq13 Length=24101694 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 115279 ATTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA 115338 |||| | ||||| || ||||| || || ||||| ||||| || || ||| |||| ||| Sbjct 5372787 ATTACAGATGCAGATCTTTGTTAAGACTCTCACCGGAAAGACAATCACCCTCGAGGTGGA 5372846 Query 115339 GTCCAGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCG 115397 | ||||| | | |||| || ||| || || ||||| ||||| |||| Sbjct 5372847 AAGCTCTGACACAATCG-ACAACGTCAAAGCCAAGATCCAGGATAAGGAAGGTATCCCTC 5372905 Query 115398 TTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCG 115457 ||||||||||| ||||| | ||| || || || ||||||||| | ||| |||| | Sbjct 5372906 CGGATCAGCAAAGGCTTATCTTTGCCGGTAAGCAGCTAGAAGATGGCCGTACCTTGGCTG 5372965 Query 115458 ATTATAACATTCAAAAAGAGTCTAC 115482 | || ||||| || || ||||| || Sbjct 5372966 ACTACAACATCCAGAAGGAGTCGAC 5372990 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || ||||| ||||| || || ||||| ||| | || ||| | | Sbjct 9157675 ATGCAAATTTTCGTGAAAACACTCACTGGTAAGACCATCACCCTTGAGGTCGAGAGCTCC 9157616 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | |||| || || ||| || || || |||||| | || ||||| Sbjct 9157615 GACACCATCG-ACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCA 9157557 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||| | || | || || ||||| | ||||||| | ||| |||| ||||| || Sbjct 9157556 GCAAAGATTGATCTTCGCCGGTAAACAGCTCGAAGATGGCCGCACCTTGGCTGATTACAA 9157497 Query 115465 CATTCAAAAAGAGTCTAC 115482 |||||| ||||| || || Sbjct 9157496 CATTCAGAAAGAATCAAC 9157479 >seq8 Length=27720346 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 115279 ATTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA 115338 |||| | ||||| || ||||| || || ||||| ||||| || || ||| |||| ||| Sbjct 1542104 ATTACAGATGCAGATCTTTGTTAAGACTCTCACCGGAAAGACAATCACCCTCGAGGTGGA 1542163 Query 115339 GTCCAGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCG 115397 | ||||| | | |||| || ||| || || ||||| ||||| |||| Sbjct 1542164 AAGCTCTGACACAATCG-ACAACGTCAAAGCCAAGATCCAGGATAAGGAAGGTATCCCTC 1542222 Query 115398 TTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCG 115457 ||||||||||| ||||| | ||| || || || | ||||||| | ||| |||| | Sbjct 1542223 CGGATCAGCAAAGGCTTATCTTTGCCGGTAAGCAGCTTGAAGATGGCCGTACCTTGGCTG 1542282 Query 115458 ATTATAACATTCAAAAAGAGTCTAC 115482 | |||||||| || || ||||| || Sbjct 1542283 ACTATAACATCCAGAAGGAGTCGAC 1542307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425151097457440