Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4 136 5e-27 seq9 113 6e-20 seq16 107 2e-18 seq7 104 3e-17 >seq4 Length=30110606 Score = 136 bits (150), Expect = 5e-27 Identities = 395/597 (66%), Gaps = 11/597 (2%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| |||||||||||||| ||||| | || | |||||| || || || || Sbjct 6029438 CACGCGAAGTCGCAGTGTAGACCTTCGTCACGCGAGATCAGTTCGTTTGAGAAAGTAAGG 6029497 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 || ||||| || || || || |||||||| || || || ||| | | | || || ||||| Sbjct 6029498 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATTGA-GCAGAAGCTTCCGGAGAAGAA 6029556 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGCTGTCATGTA 32838 || ||||| || || || || || | || || | | | | | | | | | Sbjct 6029557 GATACCTTCGACGCAAGCGAAAGCTATGATTCGTTCAGCGAAGGTCTGAGATC-CTTCGA 6029615 Query 32839 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 32898 |||| || ||||| | || ||||| || ||||| || || || || || | Sbjct 6029616 TCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCGGA 6029675 Query 32899 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 32958 |||||| || | | || || | ||||| | || ||||| | | ||||| ||||| | Sbjct 6029676 AGAGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTATCGAGGAGGAGACTGTACATCT 6029735 Query 32959 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCT 33018 | || || ||||| ||||| || || || |||||||||||| | ||||| | | | Sbjct 6029736 CGGAGTGGATGTTCTCAATCGCGATCTGGAATCCGTAGAAGGCACGCGCCTCCGAGACTT 6029795 Query 33019 GTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 | || || | ||| || ||| || | ||| || ||| |||||||| || ||| Sbjct 6029796 GGACATC-GGACATGAAACGTGAGGCGAGATTCTCTAGCACGATTCCGTCTGACGCGGCA 6029854 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAG---TTTATTCCA 33133 || || || | || ||||| || || | |||| | | || | || || | ||| Sbjct 6029855 AAGAAGGCGAGGACGTGTTTGATGAAGTGGCGTTCGCCGTCGT-TGAGGCTGTTCTCCCA 6029913 Query 33134 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33193 || | | |||| ||||| ||| |||||||| | ||||| || ||||| || || || Sbjct 6029914 GTCGCGGTTGTCTTGAGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTT 6029973 Query 33194 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 33250 || ||||| | |||||| | | || || ||||| || ||| ||||| | ||| Sbjct 6029974 CTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGG 6030030 >seq9 Length=38094978 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 32305348 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 32305289 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| ||||| ||||| || || ||||| |||||| | |||||||||||| |||||| Sbjct 32305288 ATTAGATGTTCCATTTGTGCCACGAATATAACTTCCAGTTGCACGAATATTATGAATTGA 32305229 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| || ||||| || ||| || | || || ||| | || ||||| || Sbjct 32305228 AACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTTTCATATAT 32305169 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||| || || |||||||| ||||| | ||||| ||||| Sbjct 32305168 GCCGTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 32305127 >seq16 Length=29110212 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 22277660 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 22277601 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| ||||| ||||| || || || || |||||| | |||||||||||| |||||| Sbjct 22277600 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAATTGA 22277541 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| || ||||| || ||| || | || || ||| | || ||||| || Sbjct 22277540 AACACCAATACCCCCAGCTGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 22277481 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||| || || |||||||| ||||| | ||||| ||||| Sbjct 22277480 GCCGTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 22277439 >seq7 Length=33617777 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 26389526 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 26389467 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| ||||| ||||| || || || || |||||| | ||||||||||| |||||| Sbjct 26389466 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTGTGAATTGA 26389407 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| || ||||| || ||| || | || || ||| | || ||||| || Sbjct 26389406 AACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 26389347 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||| || || |||||||| ||||| | ||||| ||||| Sbjct 26389346 GCCGTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 26389305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633337266075200