Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6 165 2e-35 seq4 158 2e-33 seq9 140 6e-28 >seq6 Length=26391736 Score = 165 bits (182), Expect = 2e-35 Identities = 439/657 (67%), Gaps = 29/657 (4%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||| || | ||| |||||||||||| || | || || Sbjct 4051562 ATCTGGGAGATGTACAAGAAAGCCGAAGCATCCTTCTGGACCGCCGAAGAAGTAGATCTA 4051503 Query 42360 GCCAAGGACACGGCCGGCTGGGAG-------TCACTGTCTGAGAACGAAAAGTTTTTCCT 42412 | | |||| || ||||||| ||| | | | ||||| | ||| | Sbjct 4051502 TCTCAAGACAACCGCGACTGGGAGAACAGCCTCAACGACGGCGAACGCCAC----TTCAT 4051447 Query 42413 CAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCAC 42472 |||| || | || |||||||||||||| || ||||| || || ||||| || || | Sbjct 4051446 CAAACACGTCCTCGCCTTCTTCGCCGCGTCAGACGGAATCGTGTTAGAGAATCTCGCTTC 4051387 Query 42473 CAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAG 42531 | | |||||| || || || || |||||||| ||| |||||||| |||||||| | Sbjct 4051386 CCGTTTCATGTCCGATGTCCAAGTCTCGGAGGCGCG-TGCTTTCTACGGATTCCAGATCG 4051328 Query 42532 CCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATC 42591 | || ||||| | ||||| ||| ||||| || ||| | || |||||| || Sbjct 4051327 CGATTGAGAATATCCACTCCGAGATGTACAGTCTCCTCCTCGATACTTACATCAAAGACA 4051268 Query 42592 CCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGG 42651 | ||| | || || ||| || || ||||| || || ||| || |||||| | Sbjct 4051267 ACAAAGAGAGAGACCATCTCTTCCGCGCGATTGAGACCATCCCTTGCGTCGCGAAGAAAG 4051208 Query 42652 CGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCA-ACGTTCGGCGAGAGGCTGGT 42709 | | |||||| | || |||||||| | || | || || |||| || | | | Sbjct 4051207 CTCAGTGGGCGATGAAATGGATCGA-----CGGATCTCAGACCTTCGCTGAACGAATCAT 4051153 Query 42710 AGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCT 42769 || || | |||||| || ||||||||||| || |||| ||| ||||||||||| Sbjct 4051152 CGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGAAGCTTCTGCTCAATCTTCTGGCT 4051093 Query 42770 CAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACG 42828 ||| || ||| || ||||| || || || ||||| |||||||||||| | |||| Sbjct 4051092 TAAGAAGCGAGGACTC-ATGCCTGGCCTTACTTTCTCAAACGAACTCATCTCGCGTGACG 4051034 Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC-AAGC-C 42886 | || || || | ||||| || ||||| || | | || | ||||| ||| |||| Sbjct 4051033 AAGGTCTACACTGCGACTTCGCGTGCCTTCTCTACACG---CTCCTCA-ACACGAAGCTG 4050978 Query 42887 CTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 |||| ||||| || | ||||| | || || ||||||||||||| |||||| Sbjct 4050977 AGCGAA-GAGCGCGTGAAGTCCATCGTGTGCGACGCGGTGGAGATCGAGAGGGAGTT 4050922 >seq4 Length=30110606 Score = 158 bits (174), Expect = 2e-33 Identities = 436/656 (66%), Gaps = 27/656 (4%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||| || | ||| |||||||||||| || | || || Sbjct 6029991 ATCTGGGAGATGTACAAGAAAGCCGAAGCATCCTTCTGGACCGCCGAAGAAGTAGATCTA 6029932 Query 42360 GCCAAGGACACGGCCGGCTGGGAG-------TCACTGTCTGAGAACGAAAAGTTTTTCCT 42412 | | |||| || ||||||| ||| | | | ||||| | ||| | Sbjct 6029931 TCTCAAGACAACCGCGACTGGGAGAACAGCCTCAACGACGGCGAACGCCAC----TTCAT 6029876 Query 42413 CAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCAC 42472 |||| || | || |||||||| ||||| || ||||| || || ||||| || ||| | Sbjct 6029875 CAAACACGTCCTCGCCTTCTTTGCCGCGTCAGACGGAATCGTGCTAGAGAATCTCGCCTC 6029816 Query 42473 CAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGC 42532 | |||||| || || || || |||||||| ||||||||| |||||||| || Sbjct 6029815 ACGTTTCATGTCCGATGTCCAAGTCTCGGAGGCGCGTGCCTTCTACGGATTCCAGATCGC 6029756 Query 42533 CATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC 42592 || |||||| | ||||| ||| ||||| || ||| | || |||||| || Sbjct 6029755 GATTGAGAACATCCACTCCGAGATGTACAGTCTCCTCCTCGATACTTACATCAAAGACAA 6029696 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | ||| | || || ||| || || || || || || ||| || |||||| || Sbjct 6029695 CAAAGAGAGAGACCATCTCTTCCGCGCGATTGAAACCATCCCTTGCGTCGCGAAGAAAGC 6029636 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCA-ACGTTCGGCGAGAGGCTGGTA 42710 | |||||| | || |||||||| || || | || || |||| || | | || Sbjct 6029635 TCAGTGGGCGATGAAATGGATCGA-AG----GATCTCAGACCTTCGCTGAACGAATCATA 6029581 Query 42711 GCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTC 42770 || || | |||||| || ||||||||||| || |||| ||| ||||||||||| Sbjct 6029580 GCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGAAGCTTCTGCTCAATCTTCTGGCTT 6029521 Query 42771 AAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGA 42829 ||| | ||| || ||||| || || || ||||| |||||||| ||| | ||||| Sbjct 6029520 AAGAAACGAGGACTC-ATGCCTGGCCTTACTTTCTCAAACGAACTGATCTCGCGTGACGA 6029462 Query 42830 GGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC-AAGC-CC 42887 || || || | ||||| || ||||| || | | || | ||||| ||| |||| | Sbjct 6029461 AGGTCTACACTGCGACTTCGCGTGCCTTCTCTACACG---CTCCTCA-ACACGAAGCTCA 6029406 Query 42888 TCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 |||| ||||| || | | ||| | || || ||||||||||||| |||||| Sbjct 6029405 GCGAA-GAGCGCGTGAAGTCTATCGTGTGCGACGCGGTGGAGATCGAGAGGGAGTT 6029351 >seq9 Length=38094978 Score = 140 bits (154), Expect = 6e-28 Identities = 362/540 (67%), Gaps = 14/540 (3%) Strand=Plus/Minus Query 42408 TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTG 42467 ||| ||||| || | || |||||||||||||| || ||||| || || ||||| || Sbjct 5074264 TTCATCAAACACGTCCTCGCCTTCTTCGCCGCGTCAGACGGAATCGTGTTAGAGAATCTC 5074205 Query 42468 GCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCA 42526 || || | |||||| || || || || |||||||| ||| |||||||| ||||| Sbjct 5074204 GCTTCCCGTTTCATGTCCGATGTCCAAGTCTCGGAGGCGCG-TGCTTTCTACGGATTCCA 5074146 Query 42527 GATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCT 42586 ||| || || ||||| | ||||| ||| ||||| || ||| | || |||||| Sbjct 5074145 GATCGCGATTGAGAATATCCACTCCGAGATGTACAGTCTCCTCCTCGATACTTACATCAA 5074086 Query 42587 GGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAA 42646 || ||| | || || ||| || || || || || || ||| || ||| Sbjct 5074085 AGACAATAAAGAGAGAGACCATCTCTTCCGCGCGATTGAAACCATCCCTTGCGTCGCGAA 5074026 Query 42647 GAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCT 42706 ||| || | ||||| | | |||||||| | | | ||| |||| || | | Sbjct 5074025 GAAAGCCCAGTGGGCTATGACATGGATCGACGGATCTCA---AACCTTCGCTGAACGAAT 5073969 Query 42707 GGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTG 42766 | || || | |||||| || ||||||||||| || |||| ||| |||||||| Sbjct 5073968 CATCGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGAAGCTTCTGCTCAATCTTCTG 5073909 Query 42767 GCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 ||| ||| | |||| || ||||| || || || ||||| |||||||| ||| | | Sbjct 5073908 GCTTAAGAAACGAGGTCTC-ATGCCTGGCCTTACTTTCTCAAACGAACTGATCTCGCGTG 5073850 Query 42826 ACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC-AAG 42884 |||| || || || | ||||| || ||||| || | | || | ||||| ||| ||| Sbjct 5073849 ACGAAGGTCTACACTGCGACTTCGCTTGCCTTCTCTACACG---CTCCTCA-ACACGAAG 5073794 Query 42885 C-CCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 | |||| ||||| || | | ||| | || || ||||||||||||| |||||| Sbjct 5073793 CTGAGCGAA-GAGCGCGTGAAGTCGATCGTGTGCGACGCGGTGGAGATCGAGAGGGAGTT 5073735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943899940621120