Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq11 120 3e-22 seq10 120 3e-22 seq12 111 1e-19 >seq11 Length=49703607 Score = 120 bits (132), Expect = 3e-22 Identities = 192/272 (71%), Gaps = 8/272 (3%) Strand=Plus/Minus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 ||||| || || | || | ||||| || |||||||||||| || || || | |||| Sbjct 3083231 TGAGCGAGAATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCGAGACCC 3083172 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 || || | || | |||||||| ||||| ||||| || || | || |||||||| || Sbjct 3083171 ATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTTGCAACATAAAACTGT 3083112 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACAC 20428 |||| ||| || || ||||| ||||||||| || || | || ||||| || || Sbjct 3083111 GCAAACATGTGGCATGGAGGAAGTGCCATCAACTTCAGATCAGGAGGATTCCAAGCCGAC 3083052 Query 20429 ATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAATGTACGACAA 20484 || ||||||| || ||| | |||||||| || || | ||| || || || | | Sbjct 3083051 ATTATGATTCGTCGATCATCAGGATTATTCTTGATCTTGTTAAT-TAC-ATCTA--AGAG 3082996 Query 20485 TTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 || ||||| || ||||| ||||| ||||||| Sbjct 3082995 CTGATCAAATCCTTGGCCAGTATAATCAGCAT 3082964 Score = 120 bits (132), Expect = 3e-22 Identities = 192/272 (71%), Gaps = 8/272 (3%) Strand=Plus/Minus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 ||||| || || | || | ||||| || |||||||||||| || || || | |||| Sbjct 3083795 TGAGCGAGAATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCGAGACCC 3083736 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 || || | || | |||||||| ||||| ||||| || || | || |||||||| || Sbjct 3083735 ATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTTGCAACATAAAACTGT 3083676 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACAC 20428 |||| ||| || || ||||| ||||||||| || || | || ||||| || || Sbjct 3083675 GCAAACATGTGGCATGGAGGAAGTGCCATCAACTTCAGATCAGGAGGATTCCAAGCCGAC 3083616 Query 20429 ATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAATGTACGACAA 20484 || ||||||| || ||| | |||||||| || || | ||| || || || | | Sbjct 3083615 ATTATGATTCGTCGATCATCAGGATTATTCTTGATCTTGTTAAT-TAC-ATCTA--AGAG 3083560 Query 20485 TTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 || ||||| || ||||| ||||| ||||||| Sbjct 3083559 CTGATCAAATCCTTGGCCAGTATAATCAGCAT 3083528 >seq10 Length=25316904 Score = 120 bits (132), Expect = 3e-22 Identities = 194/275 (71%), Gaps = 8/275 (3%) Strand=Plus/Minus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 || ||||| || || | || | ||||| || |||||||||||| || || | | | Sbjct 2742452 ACGTGAGCGAGAATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACGGAGA 2742393 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||| || | || | |||||||| ||||| ||||| || || | || |||||||| Sbjct 2742392 CCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTTGCAACATAAAAC 2742333 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 || |||| ||| || || ||||| ||||||||| || || | || ||||| || Sbjct 2742332 TGTGCAAACATGTGGCATGGAGGAAGTGCCATCAACTCCAGATCAGGAGGATTCCAAGCG 2742273 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAATGTACGA 20481 |||||||||||| || ||| | |||||||| || || | ||| || || || | Sbjct 2742272 GACATAATGATTCGTCGATCATCAGGATTATTCTTGATCTTGTTAAT-TAC-ATCTA--A 2742217 Query 20482 CAATTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 | || ||||| || ||||| ||||| ||||||| Sbjct 2742216 GAGCTGATCAAATCCTTGGCCAGTATAATCAGCAT 2742182 >seq12 Length=33044737 Score = 111 bits (122), Expect = 1e-19 Identities = 192/275 (70%), Gaps = 8/275 (3%) Strand=Plus/Minus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 || ||||| || || | || | ||||| || |||||||||||| || || || | Sbjct 2862674 ACGTGAGCGAGAATGCATGTGAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCGAGC 2862615 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||| || | || | |||||||| ||||| ||||| || || | || |||||||| Sbjct 2862614 CCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTTGCAACATAAAAC 2862555 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 || |||| || || || ||||| ||||||||| || || | || ||||| || Sbjct 2862554 TGTGCAAACATGTCGCATGGAGGAAGTGCCATCAACTTCAGATCAGGAGGATTCCAAGCC 2862495 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAATGTACGA 20481 |||| ||||||| || ||| | |||||||| || || | ||| || || || | Sbjct 2862494 GACATTATGATTCGTCGATCATCAGGATTATTCTTGATCTTGTTAAT-TAC-ATCTA--A 2862439 Query 20482 CAATTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 | || ||||| || ||||| ||||| ||||||| Sbjct 2862438 GAGCTGATCAAATCCTTGGCCAGTATAATCAGCAT 2862404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441167495442080