Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq17 113 4e-20 seq14 109 4e-19 seq3 109 4e-19 seq9 84.2 2e-11 >seq17 Length=35492130 Score = 113 bits (124), Expect = 4e-20 Identities = 170/241 (71%), Gaps = 18/241 (7%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| ||||| |||||||||| ||||||||| ||||||||| ||||||||||| || Sbjct 11454644 ACCTCCCCTCAGACGCAGCACCAAATGAAGCGTCGACTCCTTCTGGATGTTGTAATCGGC 11454585 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || | |||| |||| || || ||||| || ||||| |||||||||||| || Sbjct 11454584 GAGTGTTCTCCCGTCTTCCAGCTGTTTCCCGGCGAAGATCAGACGCTGCTGATCCGGTGG 11454525 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | || |||| | | | || |||| ||||| | || | | || | Sbjct 11454524 GATCCCTTCCTTGT-CTTGGATCTTCGCTT--------TCACATTGTCGATCGTGTCTGA 11454474 Query 34080 T---TCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 | || ||| ||||| || || || ||||| |||||||||||||| |||||||| Sbjct 11454473 TGACTCAACCTCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 11454414 Query 34131 T 34131 | Sbjct 11454413 T 11454413 >seq14 Length=31758599 Score = 109 bits (120), Expect = 4e-19 Identities = 169/241 (70%), Gaps = 18/241 (7%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| ||||| |||||||||| ||||||||| ||| ||||| ||||||||||| || Sbjct 11737845 ACCTCCCCTCAGACGCAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCGGC 11737786 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || | |||| |||| || || |||||||| ||||| |||||||||||| || Sbjct 11737785 TAGCGTTCTCCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAGACGCTGCTGATCCGGTGG 11737726 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | || |||| | | | || |||| ||||| | || | | || | Sbjct 11737725 GATCCCTTCCTTGT-CTTGGATCTTCGCTT--------TCACATTGTCGATCGTGTCTGA 11737675 Query 34080 T---TCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 | || ||| ||||| || || || ||||| |||||||||||||| |||||||| Sbjct 11737674 TGACTCAACCTCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 11737615 Query 34131 T 34131 | Sbjct 11737614 T 11737614 >seq3 Length=28500605 Score = 109 bits (120), Expect = 4e-19 Identities = 169/241 (70%), Gaps = 18/241 (7%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| ||||| |||||||||| ||||||||| ||| ||||| ||||||||||| || Sbjct 10831929 ACCTCCCCTCAGACGCAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCGGC 10831870 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || | |||| |||| || || |||||||| ||||| |||||||||||| || Sbjct 10831869 TAGCGTTCTCCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAGACGCTGCTGATCCGGTGG 10831810 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | || |||| | | | || |||| ||||| | || | | || | Sbjct 10831809 GATCCCTTCCTTGT-CTTGGATCTTCGCTT--------TCACATTGTCGATCGTGTCTGA 10831759 Query 34080 T---TCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 | || ||| ||||| || || || ||||| |||||||||||||| |||||||| Sbjct 10831758 TGACTCAACCTCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 10831699 Query 34131 T 34131 | Sbjct 10831698 T 10831698 >seq9 Length=38094978 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/92 (83%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 114333 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAAC 114390 ||||||||| |||||||||||||||| |||||||| |||| || || ||| |||||| Sbjct 34255153 TCATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAAAAAAG-AATATCCGAGGAAC 34255211 Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATC 114422 | ||||||| || ||||||||||| ||| || Sbjct 34255212 CGTAACTGATTTAATGAGCCATTCGCGGTTTC 34255243 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/92 (83%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 115530 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAAC 115587 ||||||||| |||||||||||||||| |||||||| |||| || || ||| |||||| Sbjct 34255153 TCATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAAAAAAG-AATATCCGAGGAAC 34255211 Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATC 115619 | ||||||| || ||||||||||| ||| || Sbjct 34255212 CGTAACTGATTTAATGAGCCATTCGCGGTTTC 34255243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396882323764024