Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq9 147 5e-30 seq6 143 6e-29 seq4 131 4e-25 seq11 91.5 3e-13 >seq9 Length=38094978 Score = 147 bits (162), Expect = 5e-30 Identities = 568/879 (65%), Gaps = 30/879 (3%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 ||||| ||||| || || | || ||||| ||||| ||||| || | ||| |||| ||| Sbjct 5074396 TTCCCAATCCACTACCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCATCCTTCTGG 5074337 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGCGAGAAACTCAATGA 242993 || |||| ||||| ||| | | || ||| | ||||||| | | ||||| || Sbjct 5074336 ACTGCCGAAGAAGTAGATCT-ATCACAAGACAACCGCGACTGGGAAAACAGCCTCAACGA 5074278 Query 242994 CGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 243053 || |||||| || |||||||||||| | || | || ||||| | || || || || || Sbjct 5074277 CGGCGAACGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCGTCAGACGGAATCGT 5074218 Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTG-GAAGTAACGGTTCCAGAGGCACGGCAA 243111 | | || ||||| || || ||| ||| || || || | ||||| || Sbjct 5074217 GTTAGAGAATCTCGCTTCCCG--TTTCATGTCCGATGTCCAAGTCTCGGAGGCGCGTGCT 5074160 Query 243112 TTTTATGCTTACCAAAC----ATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCT 243167 || || | | ||| | ||| | |||| ||||| || || || ||| || Sbjct 5074159 TTCTACGGATTCCAGATCGCGATTGA--GAAT--ATCCACTCCGAGATGTACAGTCTCCT 5074104 Query 243168 TATCGACGCGCTTATTTCA--GATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGAA 243225 |||| | ||| ||| || | ||||| || || | || ||| ||| || ||| Sbjct 5074103 CCTCGATAC--TTACATCAAAGACAATAAAGAGAGAGACCATCTCTTCCGCGCGATTGAA 5074046 Query 243226 AACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGG---T 243282 | ||| || || || || || | |||||| || ||| | || ||| | Sbjct 5074045 ACCATCCCTTGCGTCGCGAAGAAAGCCCAGTGGGCTATGACATGGATCGA---CGGATCT 5073989 Query 243283 AAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGG 243342 || | || ||||| || || |||| | | ||||| |||||||| | || ||||| Sbjct 5073988 CAAACCTTCGCTGAACGAATCATCGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGA 5073929 Query 243343 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402 || |||||| | ||||| ||||| ||| |||| | ||||||||||| | | || Sbjct 5073928 AGCTTCTGCTCAATCTTCTGGCTTAAGAAACGAGGTCTCATGCCTGGCCTTACTTTCTCA 5073869 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCA 243462 ||||| | ||| || ||||| || || ||| | |||| | ||| | || | Sbjct 5073868 AACGAACTGATCTCGCGTGACGAAGGTCTACACTGCGACTTCGCTTGCCTTCTCTACAC- 5073810 Query 243463 AAGCTCCAGAACAAGCTACCATTCGAAACG---GTCAAACAAATCATCACAGAAGCAGTT 243519 ||||| |||| | | |||| | || || ||| | || || || Sbjct 5073809 --GCTCCTCAACACGAAGCTGAGCGAAGAGCGCGTGAAGTCGATCGTGTGCGACGCGGTG 5073752 Query 243520 GAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCT 243579 || | ||| | ||| || | |||||||| |||||||| | | |||| |||||| | Sbjct 5073751 GAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCATGCGCGTTGGTTGGGATGAACCGT 5073692 Query 243580 GAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTAT 243639 || | ||| | ||||| || || || ||||| || | |||| |||||||| || Sbjct 5073691 GATTTGATGAGTCAGTATATTGAGTTTGTAGCGGATAGGCTTTTGGGTGCGCTTGGGTAC 5073632 Query 243640 GAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 | ||| |||||| | ||||| |||| | ||||| || || |||||||||||| Sbjct 5073631 GGGAAGGTGTACGGTGTGAGTAACCCTTTTGATTGGATGGAACTTATCTCGCTTCAAGGG 5073572 Query 243700 AAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 || |||||||||||||| || || || | ||||| ||| Sbjct 5073571 AAGACTAACTTCTTCGAGAAACGCGTTGGCGATTACCAA 5073533 >seq6 Length=26391736 Score = 143 bits (158), Expect = 6e-29 Identities = 573/883 (65%), Gaps = 38/883 (4%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 ||||| ||||| || || | || ||||| ||||| ||||| || | ||| |||| ||| Sbjct 4051583 TTCCCAATCCACTACCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCATCCTTCTGG 4051524 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGCGAGAAA---CTCAA 242990 ||| |||| ||||| ||| | | || ||| | ||||||| ||||| ||||| Sbjct 4051523 ACCGCCGAAGAAGTAGATCT-ATCTCAAGACAACCGCGACTGG---GAGAACAGCCTCAA 4051468 Query 242991 TGACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTAT 243050 |||| |||||| || |||||||||||| | || | || ||||| | || || || || Sbjct 4051467 CGACGGCGAACGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCGTCAGACGGAAT 4051408 Query 243051 TGTGATGGAAAATCT-GCAGACCAACTTTAGTGTG-GAAGTAACGGTTCCAGAGGCACGG 243108 ||| | || ||||| || || ||| ||| || || || | ||||| || Sbjct 4051407 CGTGTTAGAGAATCTCGCTTCCCG--TTTCATGTCCGATGTCCAAGTCTCGGAGGCGCGT 4051350 Query 243109 CAATTTTATGCTTACCAAAC----ATTCAACGAATCTATCCATTCTGAACAATATGCTCT 243164 || || | | ||| | ||| | |||| ||||| || || || ||| Sbjct 4051349 GCTTTCTACGGATTCCAGATCGCGATTGA--GAAT--ATCCACTCCGAGATGTACAGTCT 4051294 Query 243165 TCTTATCGACGCGCTTATTTCAGATG-AACAA-GAGCGAAACGAGCTTTTCGACGCCATC 243222 || |||| | ||| ||| | ||||| ||| || || | || ||| ||| || Sbjct 4051293 CCTCCTCGATAC--TTACATCAAAGACAACAAAGAGAGAGACCATCTCTTCCGCGCGATT 4051236 Query 243223 GAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGG- 243281 || | ||| || || || || || | ||||| ||| ||| | || ||| Sbjct 4051235 GAGACCATCCCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATCGA---CGGA 4051179 Query 243282 --TAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCC 243339 | | | || ||||| || || |||| | | ||||| |||||||| | || ||| Sbjct 4051178 TCTCAGACCTTCGCTGAACGAATCATCGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCC 4051119 Query 243340 GGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTG 243399 || || |||||| | ||||| ||||| ||| ||| | ||||||||||| | | Sbjct 4051118 GGAAGCTTCTGCTCAATCTTCTGGCTTAAGAAGCGAGGACTCATGCCTGGCCTTACTTTC 4051059 Query 243400 TCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTA 243458 || ||||| ||||| || ||||| || || ||| | |||| ||| ||| | || Sbjct 4051058 TCAAACGAACTCATCTCGCGTGACGAAGGTCTACACTGCGACTTCGCGTGC-CTTCTCTA 4051000 Query 243459 TTCAAAGCTCCAGAACAAGCTACCATTCGAAACG---GTCAAACAAATCATCACAGAAGC 243515 | ||||| |||| | | |||| | || || ||| | || || Sbjct 4050999 CAC---GCTCCTCAACACGAAGCTGAGCGAAGAGCGCGTGAAGTCCATCGTGTGCGACGC 4050943 Query 243516 AGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAA 243575 || || | ||| | ||| || | |||||||| |||||||| | | |||| ||||| Sbjct 4050942 GGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCATGCGCGTTGGTTGGGATGAA 4050883 Query 243576 CTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGG 243635 | ||| | ||| | ||||| || || || ||||| || | |||| |||||||| Sbjct 4050882 CCGTGATTTGATGAGTCAGTATATTGAGTTTGTAGCGGATAGGCTTTTGGGTGCGCTTGG 4050823 Query 243636 TTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCA 243695 || | ||| |||||| | ||||| |||| | ||||| || || |||||||| Sbjct 4050822 CTACGGGAAGGTGTACGGTGTGAGTAACCCTTTTGATTGGATGGAACTTATCTCGCTTCA 4050763 Query 243696 AGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 |||||| ||||||||||| || || || ||| | ||||| ||| Sbjct 4050762 AGGGAAGACTAACTTCTTTGAGAAACGCGTCGGCGATTACCAA 4050720 >seq4 Length=30110606 Score = 131 bits (144), Expect = 4e-25 Identities = 570/882 (65%), Gaps = 36/882 (4%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 ||||| ||||| || || | || ||||| ||||| ||||| || | ||| |||| ||| Sbjct 6030012 TTCCCAATCCACTACCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCATCCTTCTGG 6029953 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGCGAGAAA---CTCAA 242990 ||| |||| ||||| ||| | | || ||| | ||||||| ||||| ||||| Sbjct 6029952 ACCGCCGAAGAAGTAGATCT-ATCTCAAGACAACCGCGACTGG---GAGAACAGCCTCAA 6029897 Query 242991 TGACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTAT 243050 |||| |||||| || |||||||||||| | || | || || || | || || || || Sbjct 6029896 CGACGGCGAACGCCACTTCATCAAACACGTCCTCGCCTTCTTTGCCGCGTCAGACGGAAT 6029837 Query 243051 TGTGATGGAAAATCTGCAGACCAACTTTAGTGTG-GAAGTAACGGTTCCAGAGGCACGGC 243109 ||| | || ||||| | || ||| ||| || || || | ||||| || Sbjct 6029836 CGTGCTAGAGAATCT-CGCCTCACGTTTCATGTCCGATGTCCAAGTCTCGGAGGCGCGTG 6029778 Query 243110 AATTTTATGCTTACCAAAC----ATTCAACGAATCTATCCATTCTGAACAATATGCTCTT 243165 || || | | ||| | ||| | ||| ||||| || || || ||| Sbjct 6029777 CCTTCTACGGATTCCAGATCGCGATTGA--GAAC--ATCCACTCCGAGATGTACAGTCTC 6029722 Query 243166 CTTATCGACGCGCTTATTTCAGATG-AACAA-GAGCGAAACGAGCTTTTCGACGCCATCG 243223 || |||| | ||| ||| | ||||| ||| || || | || ||| ||| || | Sbjct 6029721 CTCCTCGATAC--TTACATCAAAGACAACAAAGAGAGAGACCATCTCTTCCGCGCGATTG 6029664 Query 243224 AAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTA 243283 ||| ||| || || || || || | ||||| ||| ||| | ||| | Sbjct 6029663 AAACCATCCCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATCGAAGGATCTC 6029604 Query 243284 AATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGA 243343 | | || ||||| || || | || | | ||||| |||||||| | || ||||| | Sbjct 6029603 AGACCTTCGCTGAACGAATCATAGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGAA 6029544 Query 243344 GTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 243403 | |||||| | ||||| ||||| ||| ||| | ||||||||||| | | || | Sbjct 6029543 GCTTCTGCTCAATCTTCTGGCTTAAGAAACGAGGACTCATGCCTGGCCTTACTTTCTCAA 6029484 Query 243404 ACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCA 243462 |||| | ||| || ||||| || || ||| | |||| ||| ||| | || | Sbjct 6029483 ACGAACTGATCTCGCGTGACGAAGGTCTACACTGCGACTTCGCGTGC-CTTCTCTACAC- 6029426 Query 243463 AAGCTCCAGAACA---AGCTACCATTCGAAACG---GTCAAACAAATCATCACAGAAGCA 243516 ||||| |||| |||| || |||| | || || ||| | || || Sbjct 6029425 --GCTCCTCAACACGAAGCT--CAG-CGAAGAGCGCGTGAAGTCTATCGTGTGCGACGCG 6029371 Query 243517 GTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAAC 243576 || || | ||| | ||| || | |||||||| |||| ||| | | |||| |||||| Sbjct 6029370 GTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTTGGGATGAAC 6029311 Query 243577 TCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGT 243636 ||| | ||| | ||||| || || || ||||| || | |||| |||||||| Sbjct 6029310 CGTGATTTGATGAGTCAGTATATTGAGTTTGTAGCGGATAGGCTTTTGGGTGCGCTTGGC 6029251 Query 243637 TATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAA 243696 || | ||| |||||| | ||||| |||| | ||||| || || ||||||||| Sbjct 6029250 TACGGGAAGGTGTACGGTGTGAGTAACCCTTTTGATTGGATGGAACTTATCTCGCTTCAA 6029191 Query 243697 GGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 ||||| |||||||||||||| || || || | ||||| ||| Sbjct 6029190 GGGAAGACTAACTTCTTCGAGAAACGCGTTGGCGATTACCAA 6029149 >seq11 Length=49703607 Score = 91.5 bits (100), Expect = 3e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 30987 TGCGAATTGCTTCTTCTTCCTCGGGTGTGATCTCGTTTTCGATACCGAACACTTTTCGAA 31046 |||||| | ||||||||||| ||||||| || || | ||| |||| | | || | Sbjct 22950254 TGCGAACCTCCTCTTCTTCCTCTGGTGTGAAGTCATTCTTGATGTTGAACGTTGTGCGGA 22950313 Query 31047 TCTCTTCCGGAGtttttccttttattttttCAGCGATAGCTTGACATAGAACATCAAGCA 31106 ||||||| ||||| ||||| || || | ||||| | || ||||||| | ||||||| Sbjct 22950314 TCTCTTCTGGAGTCTTTCCCTTGATCATATCAGCCACAGTTTGACATGTTAGGTCAAGCA 22950373 Query 31107 TACTCTTTATGTTCAAGAAATTCGCTCCTTGAATCAGTTCGAAGA 31151 |||| ||||||| | ||||||| | | || ||||| |||| Sbjct 22950374 AGGTCTTGATGTTCAGGTAATTCGCAGCCAGGATGAGTTCAAAGA 22950418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102354170252200