Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq6 140 4e-28 seq9 123 3e-23 seq4 120 4e-22 seq11 87.8 2e-12 >seq6 Length=26391736 Score = 140 bits (154), Expect = 4e-28 Identities = 311/458 (68%), Gaps = 13/458 (3%) Strand=Plus/Plus Query 125878 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 125937 ||||| || ||||||| |||| | |||| ||| |||||| || | | || Sbjct 4050843 ATCCGCTACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCAACGCGCA 4050902 Query 125938 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTG 125997 ||| |||||||| | | ||| || |||| || ||||| || || | |||||||| | Sbjct 4050903 TGGAAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCGCACACGATGGACTT 4050962 Query 125998 AATGGTGTCCACCC-CAGGTC--TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 126054 | | || | | ||| | | ||| | | || | || || |||| | || || Sbjct 4050963 CACGCGCTCTTCGCTCAGCTTCGTGTTGAGGAGCGTGTAGAGAAGG--CACG-CGAAGTC 4051019 Query 126055 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAG 126114 ||| ||||| |||||||| ||||||||||| || ||||| || || |||||||| Sbjct 4051020 GCAGTGTAGACCTTCGTCACGCGAGATGAGTTCGTTTGAGAAAGTAAGGCCAGGCATGAG 4051079 Query 126115 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 || |||||||| | |||||| || | || || || ||||||||||| || || || Sbjct 4051080 TCCTCGCTTCTTAAGCCAGAAGATTGAGCAGAAGCTTCCGGAGAAGAAGATACCTTCGAC 4051139 Query 126175 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCAT 126234 || ||||| || | || || ||||| |||| | || | ||| | ||| ||||| Sbjct 4051140 GCAAGCGAAAGCGATGATTCGTTCAGCGAAGGTCTGAGA---TCCGTCGATCCATTTCAT 4051196 Query 126235 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT- 126293 ||||||||| || || ||| ||| || |||| ||||| ||||| ||||| | | Sbjct 4051197 CGCCCACTGAGCTTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTC 4051256 Query 126294 TCT-TTTCTGATGGATCTTTGATGTACTTATCTATGAG 126330 ||| | | || || ||||||||||| |||| | ||| Sbjct 4051257 TCTCTCTTTGTTG--TCTTTGATGTAAGTATCGAGGAG 4051292 >seq9 Length=38094978 Score = 123 bits (136), Expect = 3e-23 Identities = 338/511 (66%), Gaps = 14/511 (3%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| ||||| |||||||| ||||| ||||| || ||||| || || ||||||||||| Sbjct 5073836 GTGTAGACCTTCGTCACGCGAGATCAGTTCGTTTGAGAAAGTAAGGCCAGGCATGAGACC 5073895 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 || ||||| | |||||| || | || || || ||||||||||| || || || || Sbjct 5073896 TCGTTTCTTAAGCCAGAAGATTGAGCAGAAGCTTCCGGAGAAGAAGATACCTTCGACGCA 5073955 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 ||||| || | || || ||||| |||| | || | ||| | ||| |||| || Sbjct 5073956 AGCGAAAGCGATGATTCGTTCAGCGAAGGTTTGAGA---TCCGTCGATCCATGTCATAGC 5074012 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT 126296 |||||| || || ||| ||| || |||| ||| | ||||| ||||| | | ||| Sbjct 5074013 CCACTGGGCTTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCGGAAGAGATGGTCTCT 5074072 Query 126297 TTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCA 126356 | | || | ||||||||||| |||| | ||| || | ||| ||||| Sbjct 5074073 CTCTTTATTG-TCTTTGATGTAAGTATCGAGGAGGAGACTGTACATCTCGGAGTGGATAT 5074131 Query 126357 TTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGG 126416 | ||| | | ||| | ||||||||| ||||| || | || | |||||| Sbjct 5074132 TCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCCTCCGAGACTTGGA---CATCGG 5074188 Query 126417 -CA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCA 126473 || ||| | | || |||||| || || ||||| || ||| | || || || || | Sbjct 5074189 ACATGAAACGGGAAGCGAGATTCTCTAACACGATTCCGTCTGACGCGGCGAAGAAGGCGA 5074248 Query 126474 GGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTT---CCAGTCGTCAAGAT 126530 ||| | || ||||| | |||| ||||| ||| | || ||||||| | Sbjct 5074249 GGACGTGTTTGATGAAGTGGCGTTCGCCGTCGTTGAGGCTGTTTTCCCAGTCGCGGTTGT 5074308 Query 126531 CCTTCGAGAGATCTACCTCCTCCGCAGTCCA 126561 | | || |||||||| || || |||||||| Sbjct 5074309 CTTGTGATAGATCTACTTCTTCGGCAGTCCA 5074339 >seq4 Length=30110606 Score = 120 bits (132), Expect = 4e-22 Identities = 194/275 (71%), Gaps = 7/275 (3%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| ||||| |||||||| ||||| ||||| || ||||| || || |||||||| || Sbjct 6029452 GTGTAGACCTTCGTCACGCGAGATCAGTTCGTTTGAGAAAGTAAGGCCAGGCATGAGTCC 6029511 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 || ||||| | |||||| || | || || || ||||||||||| || || || || Sbjct 6029512 TCGTTTCTTAAGCCAGAAGATTGAGCAGAAGCTTCCGGAGAAGAAGATACCTTCGACGCA 6029571 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 ||||| || | || || ||||| |||| | || | || | ||| |||||||| Sbjct 6029572 AGCGAAAGCTATGATTCGTTCAGCGAAGGTCTGAGA---TCCTTCGATCCATTTCATCGC 6029628 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT 126296 |||||| || || ||| ||| || |||| ||| | ||||| ||||| | | ||| Sbjct 6029629 CCACTGAGCTTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCGGAAGAGATGGTCTCT 6029688 Query 126297 -TTTCTGATGGATCTTTGATGTACTTATCTATGAG 126330 | | || || ||||||||||| |||| | ||| Sbjct 6029689 CTCTTTGTTG--TCTTTGATGTAAGTATCGAGGAG 6029721 >seq11 Length=49703607 Score = 87.8 bits (96), Expect = 2e-12 Identities = 252/385 (65%), Gaps = 12/385 (3%) Strand=Plus/Minus Query 10774 CACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAAT 10833 ||| |||| | || ||||| | |||||| | || || ||| |||||| | |||| Sbjct 35467619 CACTGTGACTTGCCGGTCAAATCTACCTGGTCTCAGCAGTGCGGAGTCAAGAACATCAGG 35467560 Query 10834 GCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGT 10893 | ||| || || || | |||| || || | | | ||| |||||||||||||| Sbjct 35467559 TCTGTTGGTTGCAGCCAACACAATGACACCGGAATTACCAGAAAATCCATCCATCTCAGT 35467500 Query 10894 CAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTG 10951 ||| || ||||| || || ||||| | |||||||| | | | ||| || || | Sbjct 35467499 CAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--ACCTCCCATCCCAGCTCCT 35467442 Query 10952 CGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGG----TTGATTTTC 11007 |||||| |||| || || ||||| ||||| || || || || || || || |||| Sbjct 35467441 CGTTGCCTACCAACAGCATCAATCTCATCAATAAACACAATGCAGGGAGCTTTCGATTTC 35467382 Query 11008 ACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCAC 11067 || ||||| | ||| | ||||| ||||| ||||| ||||| | || || Sbjct 35467381 ----GCCTTCTCAAACAAATCCCTAACTCTAGACGCACCCACACCAACAAAAAGCTCAAC 35467326 Query 11068 AAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGC 11127 ||| | | || | ||| | |||||| || | ||| || || | |||| || Sbjct 35467325 AAACTCCGAAGCAGCACACGAAAAGAAGGGCACTCCTGCTTCTCCAGCTACAGCTCTAGC 35467266 Query 11128 GAGGAGGGTCTTCCCCGTCCCAGGT 11152 | || ||||||||||| || ||| Sbjct 35467265 CAAAAGCGTCTTCCCCGTACCCGGT 35467241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597075740972960