Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6 131 2e-25 seq9 123 3e-23 seq4 111 2e-19 seq14 93.3 5e-14 seq17 91.5 2e-13 seq11 87.8 2e-12 seq18 82.4 9e-11 >seq6 Length=26391736 Score = 131 bits (144), Expect = 2e-25 Identities = 390/591 (66%), Gaps = 18/591 (3%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| ||||| |||||||| ||||||||||| || ||||| || || |||||||| || Sbjct 4051023 GTGTAGACCTTCGTCACGCGAGATGAGTTCGTTTGAGAAAGTAAGGCCAGGCATGAGTCC 4051082 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || | || || || ||||||||||| || || || || Sbjct 4051083 TCGCTTCTTAAGCCAGAAGATTGAGCAGAAGCTTCCGGAGAAGAAGATACCTTCGACGCA 4051142 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 ||||| || | | || || || |||| | || | || | ||| |||||||| Sbjct 4051143 AGCGAAAGCGATGATTCGTTCAGCGAAGGTCTGAGA---TCCGTCGATCCATTTCATCGC 4051199 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT 127769 |||||| || || ||| ||| || |||| ||||| ||||| ||||| | | ||| Sbjct 4051200 CCACTGAGCTTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTCTCT 4051259 Query 127770 -TTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACC 127828 | | || || ||||||||||| |||| | ||| || | ||| ||||| Sbjct 4051260 CTCTTTGTTG--TCTTTGATGTAAGTATCGAGGAGGAGACTGTACATCTCGGAGTGGATA 4051317 Query 127829 ATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCG 127888 | ||| | | ||| | ||||||||| ||||| || | || | ||||| Sbjct 4051318 TTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCCTCCGAGACTTGGA---CATCG 4051374 Query 127889 G-CA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCC 127945 | || ||| | | || |||||| || || ||||| || ||| | || || || || Sbjct 4051375 GACATGAAACGGGAAGCGAGATTCTCTAACACGATTCCGTCTGACGCGGCGAAGAAGGCG 4051434 Query 127946 AGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAG---GGTCTTCCAGTCGTCGAGA 128002 |||| | || ||||| | |||| ||||| || | ||| ||||||| | Sbjct 4051435 AGGACGTGTTTGATGAAGTGGCGTTCGCCGTCGTTGAGGCTGTTCTCCCAGTCGCGGTTG 4051494 Query 128003 TCCTTTGAGAGATCTACCTCCTCCGCAGTCCA-ATTGCTCATTTGAGCCTTCTTATAGAG 128061 || | || |||||||| || || || ||||| | | | || | || ||||| || | Sbjct 4051495 TCTTGAGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCG-GCTTTCTTGTACAT 4051553 Query 128062 TTCCCAGAGGTGGGGATACTTCAGGGGGAACACTGTAAATCTGTTTAGGGT 128112 ||||||| || || || | | ||||||| ||||||| | |||| Sbjct 4051554 CTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGGGGT 4051604 >seq9 Length=38094978 Score = 123 bits (136), Expect = 3e-23 Identities = 387/590 (66%), Gaps = 16/590 (3%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| ||||| |||||||| ||||| ||||| || ||||| || || ||||||||||| Sbjct 5073836 GTGTAGACCTTCGTCACGCGAGATCAGTTCGTTTGAGAAAGTAAGGCCAGGCATGAGACC 5073895 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 || ||||| | |||||| || | || || || ||||||||||| || || || || Sbjct 5073896 TCGTTTCTTAAGCCAGAAGATTGAGCAGAAGCTTCCGGAGAAGAAGATACCTTCGACGCA 5073955 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 ||||| || | | || || || |||| | || | || | ||| |||| || Sbjct 5073956 AGCGAAAGCGATGATTCGTTCAGCGAAGGTTTGAGA---TCCGTCGATCCATGTCATAGC 5074012 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT 127769 |||||| || || ||| ||| || |||| ||| | ||||| ||||| | | ||| Sbjct 5074013 CCACTGGGCTTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCGGAAGAGATGGTCTCT 5074072 Query 127770 TTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCA 127829 | | || | ||||||||||| |||| | ||| || | ||| ||||| Sbjct 5074073 CTCTTTATTG-TCTTTGATGTAAGTATCGAGGAGGAGACTGTACATCTCGGAGTGGATAT 5074131 Query 127830 TTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGG 127889 | ||| | | ||| | ||||||||| ||||| || | || | |||||| Sbjct 5074132 TCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCCTCCGAGACTTGGA---CATCGG 5074188 Query 127890 -CA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCA 127946 || ||| | | || |||||| || || ||||| || ||| | || || || || | Sbjct 5074189 ACATGAAACGGGAAGCGAGATTCTCTAACACGATTCCGTCTGACGCGGCGAAGAAGGCGA 5074248 Query 127947 GGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTT---CCAGTCGTCGAGAT 128003 ||| | || ||||| | |||| ||||| ||| | || ||||||| | | Sbjct 5074249 GGACGTGTTTGATGAAGTGGCGTTCGCCGTCGTTGAGGCTGTTTTCCCAGTCGCGGTTGT 5074308 Query 128004 CCTTTGAGAGATCTACCTCCTCCGCAGTCCA-ATTGCTCATTTGAGCCTTCTTATAGAGT 128062 | | ||| |||||||| || || |||||||| | | | || | || ||||| || | Sbjct 5074309 CTTGTGATAGATCTACTTCTTCGGCAGTCCAGAAGGATGCTTCG-GCTTTCTTGTACATC 5074367 Query 128063 TCCCAGAGGTGGGGATACTTCAGGGGGAACACTGTAAATCTGTTTAGGGT 128112 ||||||| || || || | | ||||||| ||||||| | |||| Sbjct 5074368 TCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGGGGT 5074417 >seq4 Length=30110606 Score = 111 bits (122), Expect = 2e-19 Identities = 192/275 (70%), Gaps = 7/275 (3%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| ||||| |||||||| ||||| ||||| || ||||| || || |||||||| || Sbjct 6029452 GTGTAGACCTTCGTCACGCGAGATCAGTTCGTTTGAGAAAGTAAGGCCAGGCATGAGTCC 6029511 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 || ||||| | |||||| || | || || || ||||||||||| || || || || Sbjct 6029512 TCGTTTCTTAAGCCAGAAGATTGAGCAGAAGCTTCCGGAGAAGAAGATACCTTCGACGCA 6029571 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 ||||| || | | || || || |||| | || | || | ||| |||||||| Sbjct 6029572 AGCGAAAGCTATGATTCGTTCAGCGAAGGTCTGAGA---TCCTTCGATCCATTTCATCGC 6029628 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT 127769 |||||| || || ||| ||| || |||| ||| | ||||| ||||| | | ||| Sbjct 6029629 CCACTGAGCTTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCGGAAGAGATGGTCTCT 6029688 Query 127770 -TTTCTGATGGATCTTTGATGTACTTATCTATGAG 127803 | | || || ||||||||||| |||| | ||| Sbjct 6029689 CTCTTTGTTG--TCTTTGATGTAAGTATCGAGGAG 6029721 >seq14 Length=31758599 Score = 93.3 bits (102), Expect = 5e-14 Identities = 192/282 (68%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848 || || |||||||| ||||||| ||| ||||| | ||| ||||| | ||||||||| | Sbjct 2668094 TCAAAACCATCCATTTCAGTCAGGAGCTGATTTAGGGTCTGTTCTCTTTCATCATTACCT 2668153 Query 12849 GGCATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACG 12905 |||| || | || | |||| |||| || || || ||||| || | ||||| Sbjct 2668154 CC---ACCAATTCCTGTACCTCTTTGCCTACCAACAGCATCTATTTCATCTACAAAAACA 2668210 Query 12906 ATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 12965 || ||||| |||||| ||| || || | ||| || || || ||||| ||| Sbjct 2668211 ATGCACGGAGCATTTTCTTTGGCTTTTTTGAAAAGATCACGGACCCTTGATGCACCAACA 2668270 Query 12966 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTC 13024 || ||||||||||| ||||| | | | | | || | | |||||| || | ||| Sbjct 2668271 CCAACAAACATCTCAACAAACTCAGAACCCG-AGATGGAAAAGAAGGGTACACCAGCTTC 2668329 Query 13025 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 ||| ||||||||| || | ||||| ||||| || || || Sbjct 2668330 ACCAGCGATGGCTTTTGCTAACAGGGTTTTCCCAGTACCAGG 2668371 >seq17 Length=35492130 Score = 91.5 bits (100), Expect = 2e-13 Identities = 242/366 (66%), Gaps = 8/366 (2%) Strand=Plus/Plus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848 || || |||||||| ||||||| ||| ||||| | ||| ||||| | ||||||||| | Sbjct 2556527 TCAAAACCATCCATTTCAGTCAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATTACCT 2556586 Query 12849 GGCATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACG 12905 |||| || | || | |||| |||| || || || ||||| || | ||||| Sbjct 2556587 CC---ACCAATTCCTGTACCTCTTTGCCTACCAACAGCATCTATTTCATCCACAAAAACA 2556643 Query 12906 ATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 12965 || ||||| |||||| ||| || || | ||| || || || ||||| ||| Sbjct 2556644 ATGCACGGAGCATTTTCTTTGGCTTTTTTGAAAAGATCACGGACCCTTGATGCACCAACA 2556703 Query 12966 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTC 13024 || ||||||||||| ||||| | | | | | || | | |||||| || | ||| Sbjct 2556704 CCAACAAACATCTCAACAAACTCAGAACCCG-AGATGGAAAAGAAGGGTACACCAGCTTC 2556762 Query 13025 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGC 13084 ||| || |||||| || | ||||| ||||| || || || || ||||| | Sbjct 2556763 ACCAGCAATGGCTTTTGCTAACAGGGTTTTCCCTGTACCAGGAGGACCAATAAGAAGAAC 2556822 Query 13085 ACCACGTGGGATCCTGGCACCACTTCCAAAGTAGCGCTCGGGTTGTTTAAGAAAGTCCAC 13144 || ||||||| ||||||| || | | | ||| || | || ||||| ||||| Sbjct 2556823 CCCTTTGGGGATCCGGGCACCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 2556882 Query 13145 GATTTC 13150 | ||| Sbjct 2556883 CACTTC 2556888 Score = 84.2 bits (92), Expect = 3e-11 Identities = 188/278 (68%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||| ||||| | ||||| || || ||||| | |||||||| | | Sbjct 29616878 AACCCATCCATCTCTGTCAACAACTGATTAATAGTCTGTTCCCTCTCATCATTTCCT--C 29616935 Query 12852 ATACCACCC--GCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | ||| || || | | ||| | || || |||||||| || |||||||| || |||| Sbjct 29616936 CTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAATACAATAC 29616995 Query 12910 ACGGTTGATTTTCACGG-GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 | || | ||| || || ||||| | ||| | ||||| ||||| |||||| Sbjct 29616996 AAGGG-GCTTTAGACTTAGCCTTCTCAAACAAATCCCTAACTCTAGATGCACCAACACCC 29617054 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028 ||||| | ||||||||| | | ||| | ||| || ||| || || | ||| || Sbjct 29617055 ACAAAAAGCTCCACAAACTCCGAGGCCGCACAAGAGAAGAACGGCACTCCAGCTTCCCCA 29617114 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || | || | || | ||| ||||| ||||| || || Sbjct 29617115 GCCACCGCCCTAGCCAAGAGTGTCTTACCCGTACCGGG 29617152 >seq11 Length=49703607 Score = 87.8 bits (96), Expect = 2e-12 Identities = 252/385 (65%), Gaps = 12/385 (3%) Strand=Plus/Minus Query 12689 CACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAAT 12748 ||| |||| | || ||||| | |||||| | || || ||| |||||| | |||| Sbjct 35467619 CACTGTGACTTGCCGGTCAAATCTACCTGGTCTCAGCAGTGCGGAGTCAAGAACATCAGG 35467560 Query 12749 GCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGT 12808 | ||| || || || | |||| || || | | | || |||||||||||||| Sbjct 35467559 TCTGTTGGTTGCAGCCAACACAATGACACCGGAATTACCAGAAAATCCATCCATCTCAGT 35467500 Query 12809 CAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACTG 12866 ||| || ||||| || || ||||| | |||||||| | | | ||| || || | Sbjct 35467499 CAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--ACCTCCCATCCCAGCTCCT 35467442 Query 12867 CGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGG----TTGATTTTC 12922 |||||| |||| || || ||||| || ||||| || || || || || || |||| Sbjct 35467441 CGTTGCCTACCAACAGCATCAATCTCATCAATAAACACAATGCAGGGAGCTTTCGATTTC 35467382 Query 12923 ACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCAC 12982 || ||||| | ||| | ||||| ||||| ||||| ||||| | ||| || Sbjct 35467381 ----GCCTTCTCAAACAAATCCCTAACTCTAGACGCACCCACACCAACAAAAAGCTCAAC 35467326 Query 12983 AAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGC 13042 ||| | | || | ||| | |||||| || | ||| || || | |||| || Sbjct 35467325 AAACTCCGAAGCAGCACACGAAAAGAAGGGCACTCCTGCTTCTCCAGCTACAGCTCTAGC 35467266 Query 13043 GAGGAGGGTCTTCCCCGTCCCTGGT 13067 | || ||||||||||| || ||| Sbjct 35467265 CAAAAGCGTCTTCCCCGTACCCGGT 35467241 >seq18 Length=20869551 Score = 82.4 bits (90), Expect = 9e-11 Identities = 189/282 (67%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||||||||| || ||||| || || ||||| | |||||||| | | Sbjct 6948823 AATCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--AC 6948880 Query 12852 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | ||| || || | |||||| |||| || || ||||| || ||||| || || || | Sbjct 6948881 CTCCCATCCCAGCTCCTCGTTGCCTACCAACAGCATCAATCTCATCAATAAACACAATGC 6948940 Query 12910 ACGG----TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 12965 | || || |||| || ||||| | ||| | ||||| ||||| ||| Sbjct 6948941 AGGGAGCTTTCGATTTC----GCCTTCTCAAACAAATCCCTAACTCTAGACGCACCCACA 6948996 Query 12966 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCA 13025 || ||||| | ||| ||||| | | || | ||| | |||||| || | ||| Sbjct 6948997 CCAACAAAAAGCTCAACAAACTCCGAAGCAGCACACGAAAAGAAGGGCACTCCTGCTTCT 6949056 Query 13026 CCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 13067 || || | |||| || | || ||||||||||| || ||| Sbjct 6949057 CCAGCTACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGGT 6949098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613221827125920