Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 2e-15 seq17 93.3 3e-14 seq2 93.3 3e-14 seq13 87.8 1e-12 seq14 84.2 2e-11 seq3 84.2 2e-11 seq12 82.4 5e-11 >seq8 Length=27720346 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || ||| || |||||||| | ||| ||||| || ||||| ||||| ||| Sbjct 6052400 CCACCTCTCAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATATTGTAATCAGCC 6052459 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | || || ||| |||| || | | ||||||||||| || Sbjct 6052460 AAGGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGTGGG 6052519 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | || ||||| || | || || | | || ||| || || |||| ||| || | Sbjct 6052520 ATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATA--GTATCTGAGCTCTCAA 6052577 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| || |||||||| || | ||| || || ||||| ||||| Sbjct 6052578 CCTCCAAAGTGATGGTTTTACCGGTGAGAGTCTTAACAAAGATTTGCAT 6052626 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || || || |||||| | |||| || | || || ||| |||| Sbjct 1542757 TCCTTCTGAATGTTGTAGTCAGCCAAAGTCCTGCCATCTTCAAGCTGCTTACCGGCAAAG 1542698 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCG 39646 || || | |||||| |||| || | || || ||||| ||||| |||| | | Sbjct 1542697 ATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCTTGGATTTTGGCCTTAACGTTG 1542638 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 ||| || ||||| | ||| ||||| ||||||||||| || || || || | ||| || | Sbjct 1542637 TCGATA--GTGTCAGAGCTCTCCACCTCCAAAGTAATGGTCTTTCCGGTAAGAGTCTTAA 1542580 Query 39707 CGAAGATCTGCAT 39719 ||||||||||||| Sbjct 1542579 CGAAGATCTGCAT 1542567 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || || || |||||| | |||| || | || || ||| |||| Sbjct 1543213 TCCTTCTGAATGTTGTAGTCAGCCAAAGTCCTGCCATCTTCAAGCTGCTTACCGGCAAAG 1543154 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCG 39646 || || | |||||| |||| || | || || ||||| ||||| |||| | | Sbjct 1543153 ATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCTTGGATTTTGGCCTTAACGTTG 1543094 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 ||| || ||||| | ||| ||||| ||||||||||| || || || || | ||| || | Sbjct 1543093 TCGATA--GTGTCAGAGCTCTCCACCTCCAAAGTAATAGTCTTTCCGGTAAGAGTCTTAA 1543036 Query 39707 CGAAGATCTGCAT 39719 ||||||||||||| Sbjct 1543035 CGAAGATCTGCAT 1543023 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || || || ||||| ||| |||| || | ||||| || | || Sbjct 20847319 TCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAG 20847260 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | ||||||||| |||| || | ||||| ||||| || || ||| | ||| Sbjct 20847259 ATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATCTTAGCTTTCA-CGTT 20847201 Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | ||||| | ||| ||||| |||||||| ||||| || || || | ||| || || Sbjct 20847200 GTCGATGGTGTCAGAGCTCTCCACCTCCAAAGTGATTGTCTTCCCGGTAAGAGTCTTCAC 20847141 Query 39708 GAAGATCTGCAT 39719 |||||||||||| Sbjct 20847140 GAAGATCTGCAT 20847129 >seq17 Length=35492130 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || ||| || || ||||||||||| || || || || || ||||| || Sbjct 33393496 CCACCTCTCAGACGAAGCACTAAATGCAAAGTTGACTCCTTCTGGATGTTGTAATCAGCA 33393437 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| |||| || | || || || |||| |||| | ||| ||||||| || Sbjct 33393436 AGAGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAGATTAGTCTCTGTTGATCCGGAGGG 33393377 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||| ||||| || || |||| || |||| | ||||||| || || | Sbjct 33393376 ATGCCTTCCTTGTCCTGGATCTTAGCTTTAACATTGTCG--ATGGTGTCTGAACTCTCAA 33393319 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | ||||| |||||||| |||| || || ||||| |||||||| Sbjct 33393318 CTTCTAGGGTAATGGTTTTACCGGTTAGGGTCTTGACGAATATCTGCAT 33393270 >seq2 Length=29139806 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || ||||| || | |||| ||| || || || || ||||||||||| || |||| Sbjct 2807261 AGGACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTACGACCATCC 2807320 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 ||||| || || ||| | || || | | ||||||||||| || | |||||| || || Sbjct 2807321 TCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTATCC 2807380 Query 39628 CATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 || || |||| ||| | | | ||||| | ||||||||| || | || ||||| Sbjct 2807381 TGGATCTTGGCCTTAA-CGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATTGT 2807439 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || | |||||| || ||||||||||| Sbjct 2807440 CTTTCCGGTGAGAGTTTTAACAAAGATCTGCAT 2807472 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| |||||| || | || || || || || || ||||| ||| Sbjct 2806562 CCTCCACGTAGACGCAATACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCCGCC 2806621 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| ||||| || || ||| | || || || | |||||| |||| || Sbjct 2806622 AAGGTACGACCATCCTCCAACTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 2806681 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCAC 39671 | ||||| || || || || || | ||| | | || |||| | ||| ||||| Sbjct 2806682 ATACCTTCCTTATCCTGGATCTTAGCCTTGA-CGTTGTCAATGGTGTCAGAGCTCTCCAC 2806740 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| || || || || | ||| || |||||||||||||| Sbjct 2806741 CTCCAAAGTAATCGTCTTTCCGGTAAGAGTCTTAACGAAGATCTGCAT 2806788 >seq13 Length=24101694 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || ||| || |||||||| | |||| ||||| || ||||| ||||| ||| Sbjct 9156993 CCACCTCTCAGACGAAGCACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAATCAGCC 9157052 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | || || ||| |||| || | | |||||| |||| || Sbjct 9157053 AAGGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 9157112 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | || ||||| || || || ||| | | ||| || || |||| ||| || | Sbjct 9157113 ATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATA--GTATCTGAGCTCTCAA 9157170 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | || ||||||||||| || | ||| || || ||||| ||||| Sbjct 9157171 CCTCTAGGGTGATTGTTTTACCGGTGAGAGTCTTCACAAAGATTTGCAT 9157219 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || || || |||||| | |||| || | || || ||| |||| Sbjct 5373212 TCCTTCTGAATGTTGTAGTCAGCCAAAGTCCTGCCATCTTCAAGCTGCTTACCGGCAAAG 5373153 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || || | |||||| |||| || | || || ||||| ||||| ||||| ||| Sbjct 5373152 ATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCTTGGATTTTAGCTTTAA-CGTT 5373094 Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | ||||| | ||| ||||| ||||||||||| || || || || | ||| || || Sbjct 5373093 GTCGATGGTGTCAGTGCTCTCCACCTCCAAAGTAATGGTCTTTCCGGTAAGAGTCTTGAC 5373034 Query 39708 GAAGATCTGCAT 39719 |||||||||||| Sbjct 5373033 GAAGATCTGCAT 5373022 >seq14 Length=31758599 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | || |||||| |||||||| | || ||||| || || || |||||||| Sbjct 11737844 CCTCCCCTCAGACGCAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCGGCT 11737785 Query 39553 AAAACGCGTTCA----TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 | |||||| || |||| ||||||||| |||| || | |||||||||||||| Sbjct 11737784 A----GCGTTCTCCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAGACGCTGCTGATCCGG 11737729 Query 39609 GGGTACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTT 39666 || | ||||| ||||| | || || | | || |||| | ||||||| Sbjct 11737728 TGGGATCCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCG--ATCGTGTCTGATGAC 11737671 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || | || || || || ||||||| ||||| || ||||||||||| Sbjct 11737670 TCAACCTCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCAT 11737618 >seq3 Length=28500605 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | || |||||| |||||||| | || ||||| || || || |||||||| Sbjct 10831928 CCTCCCCTCAGACGCAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCGGCT 10831869 Query 39553 AAAACGCGTTCA----TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 | |||||| || |||| ||||||||| |||| || | |||||||||||||| Sbjct 10831868 A----GCGTTCTCCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAGACGCTGCTGATCCGG 10831813 Query 39609 GGGTACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTT 39666 || | ||||| ||||| | || || | | || |||| | ||||||| Sbjct 10831812 TGGGATCCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCG--ATCGTGTCTGATGAC 10831755 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || | || || || || ||||||| ||||| || ||||||||||| Sbjct 10831754 TCAACCTCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCAT 10831702 >seq12 Length=33044737 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || ||||| |||||| | |||| |||| ||| || ||| |||| Sbjct 2891780 TCCTTCTGGATGTTGTAATCAGCCAAAGTCCTGCCATCCTCCAGTTGCTTTCCGGCAAAG 2891839 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || || | |||||| |||| || | || ||||| || || || |||| ||| Sbjct 2891840 ATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTTATCTTGGATCTTGGCCTTAA-CGTT 2891898 Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | ||||| | ||| ||||| ||||||||||| || || || || | || || || Sbjct 2891899 GTCGATGGTGTCAGAGCTCTCCACCTCCAAAGTAATGGTCTTTCCAGTCAGCGTCTTGAC 2891958 Query 39708 GAAGATCTGCAT 39719 |||||||||||| Sbjct 2891959 GAAGATCTGCAT 2891970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347212060504796