Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq14 111 2e-19 seq9 111 2e-19 seq6 111 2e-19 seq17 105 8e-18 seq4 102 1e-16 seq16 82.4 9e-11 seq7 82.4 9e-11 >seq14 Length=31758599 Score = 111 bits (122), Expect = 2e-19 Identities = 299/452 (66%), Gaps = 18/452 (4%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || || || ||||| | || | ||| |||||||| || | | ||| || || Sbjct 2668007 CGGTCAAACCGCCCTGGTCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 2668066 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | || ||||| | | || ||||| |||||||| || || ||||| || Sbjct 2668067 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATTTCAGTCAGGAGCTGATTT 2668126 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACG-CTT--CTTACCG 11679 | |||||||| | ||||| || | | |||| | | | || ||| | |||| Sbjct 2668127 AGGGTCTGTTCTCTTTCATCATT--ACCTCC-ACCAATTCCTGTACCTCTTTGCCTACCA 2668183 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 ||||| || || ||||| | || || || ||||| || | || | || |||| Sbjct 2668184 ACAGCATCTATTTCATCTACAAAAACAATGCACGGAGCATTTTCTTTGGCTTTTTTGAAA 2668243 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799 || ||||| || | || |||||||| || ||||||||||| || | ||||| Sbjct 2668244 AGATCACGGACCCTTGATGCACCAACACCAACAAACATCTCAACAAACT------CAGAA 2668297 Query 11800 CAC----TG--AATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853 | | || || |||||| ||| || ||||||||||||||| || | || || Sbjct 2668298 CCCGAGATGGAAAAGAAGGGTACACCAGCTTCACCAGCGATGGCTTTTGCTAACAGGGTT 2668357 Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCA 11913 || || |||||||| | |||| || || | || ||||||| ||||||| || Sbjct 2668358 TTCCCAGTACCAGGAGGACCAATAAGGAGAACTCCTTTGGGGATCCGGGCACCAACAGCA 2668417 Query 11914 AAGTAGCGCTCAGGCTTCTTGAGGAAGTCCAC 11945 | | | |||||||||||| || || ||||| Sbjct 2668418 GTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 2668449 >seq9 Length=38094978 Score = 111 bits (122), Expect = 2e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || ||||| || || ||||| || || || ||| ||| ||||||||||| ||| Sbjct 5073837 TGTAGACCTTCGTCACGCGAGATCAGTTCGTTTGAGAAAGTAAGGCCAGGCATGAGACCT 5073896 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | |||||| ||||| ||||| | || || ||||| || |||||||| || || || || Sbjct 5073897 CGTTTCTTAAGCCAGAAGATTGAGCAGAAGCTTCCGGAGAAGAAGATACCTTCGACGCAA 5073956 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAG 119687 |||||||||| | || ||||| || | | |||| ||||| ||| | | |||||| Sbjct 5073957 GCGAAAGCGATGATTCGTTCAGCGAAGGTTTGAGATCCGTCGATCCATGTCATAGCCCAC 5074016 Query 119688 TTGGCCTTACGCTCTATGCAGGGGACAGTTT 119718 | ||| || | | | ||| |||| |||| Sbjct 5074017 TGGGCTTTCTTCGCGACGCAAGGGATGGTTT 5074047 >seq6 Length=26391736 Score = 111 bits (122), Expect = 2e-19 Identities = 134/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || ||||| || || |||||||| || || ||| ||| ||||||||||||||| Sbjct 4051024 TGTAGACCTTCGTCACGCGAGATGAGTTCGTTTGAGAAAGTAAGGCCAGGCATGAGTCCT 4051083 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||| | || || ||||| || |||||||| || || || || Sbjct 4051084 CGCTTCTTAAGCCAGAAGATTGAGCAGAAGCTTCCGGAGAAGAAGATACCTTCGACGCAA 4051143 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTC-GAGACTTGTCGAACCACTTGAGAGCCCA 119686 |||||||||| | || ||||| |||||| |||| ||||| ||| || | ||||| Sbjct 4051144 GCGAAAGCGATGATTCGTTCAGC-GAAGGTCTGAGATCCGTCGATCCATTTCATCGCCCA 4051202 >seq17 Length=35492130 Score = 105 bits (116), Expect = 8e-18 Identities = 298/452 (66%), Gaps = 18/452 (4%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || || || ||||| | || | ||| |||||||| || | | ||| || || Sbjct 2556440 CGGTCAAACCGCCCTGGTCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 2556499 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | | ||||| | | || ||||| |||||||| || || ||||| || Sbjct 2556500 GCAACTACGATTACACCAGTGTTACCCTCAAAACCATCCATTTCAGTCAGGAGCTGATTA 2556559 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACG-CTT--CTTACCG 11679 | |||||||| | ||||| || | | |||| | | | || ||| | |||| Sbjct 2556560 AGGGTCTGTTCTCTTTCATCATT--ACCTCC-ACCAATTCCTGTACCTCTTTGCCTACCA 2556616 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 ||||| || || ||||| | || || || ||||| || | || | || |||| Sbjct 2556617 ACAGCATCTATTTCATCCACAAAAACAATGCACGGAGCATTTTCTTTGGCTTTTTTGAAA 2556676 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799 || ||||| || | || |||||||| || ||||||||||| || | ||||| Sbjct 2556677 AGATCACGGACCCTTGATGCACCAACACCAACAAACATCTCAACAAACT------CAGAA 2556730 Query 11800 CAC----TG--AATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853 | | || || |||||| ||| || |||||||| |||||| || | || || Sbjct 2556731 CCCGAGATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATGGCTTTTGCTAACAGGGTT 2556790 Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCA 11913 || || |||||||| | |||| ||||| | || ||||||| ||||||| || Sbjct 2556791 TTCCCTGTACCAGGAGGACCAATAAGAAGAACCCCTTTGGGGATCCGGGCACCAACAGCA 2556850 Query 11914 AAGTAGCGCTCAGGCTTCTTGAGGAAGTCCAC 11945 | | | |||||||||||| || || ||||| Sbjct 2556851 GTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 2556882 >seq4 Length=30110606 Score = 102 bits (112), Expect = 1e-16 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || ||||| || || ||||| || || || ||| ||| ||||||||||||||| Sbjct 6029453 TGTAGACCTTCGTCACGCGAGATCAGTTCGTTTGAGAAAGTAAGGCCAGGCATGAGTCCT 6029512 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | |||||| ||||| ||||| | || || ||||| || |||||||| || || || || Sbjct 6029513 CGTTTCTTAAGCCAGAAGATTGAGCAGAAGCTTCCGGAGAAGAAGATACCTTCGACGCAA 6029572 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTC-GAGACTTGTCGAACCACTTGAGAGCCCA 119686 |||||||| | | || ||||| |||||| |||| |||| ||| || | ||||| Sbjct 6029573 GCGAAAGCTATGATTCGTTCAGC-GAAGGTCTGAGATCCTTCGATCCATTTCATCGCCCA 6029631 >seq16 Length=29110212 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||| ||||| ||||||| |||||||| ||||||| ||| || Sbjct 16109441 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCACAGGTTCGATCCCTGTA 16109500 Query 136777 GGGAACAGCTTTTAGATATATTTTTTG 136803 | || ||||| || || |||||| Sbjct 16109501 TAGGCCA-CTTTTTCATTTAATTTTTG 16109526 >seq7 Length=33617777 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||| ||||| ||||||| |||||||| ||||||| ||| || Sbjct 19278354 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCACAGGTTCGATCCCTGTA 19278413 Query 136777 GGGAACAGCTTTTAGATATATTTTTTG 136803 | || ||||| || || |||||| Sbjct 19278414 TAGGCCA-CTTTTCCATTTAATTTTTG 19278439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588702037813600