Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq9 132 5e-26 seq16 123 3e-23 seq7 118 1e-21 seq10 109 6e-19 seq12 100 3e-16 seq11 100 3e-16 >seq9 Length=38094978 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||||| || | || | | |||||| ||||||||| Sbjct 32305347 CCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACCA 32305288 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || ||||||||||||| | || | |||||| ||||||| Sbjct 32305287 TTAGATGTTCCATTTGTGCCACGAATATAACTTCCAGTTGCACGAATATTATGAATTGAA 32305228 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || ||| ||| | ||||||| |||||| || ||||| || Sbjct 32305227 ACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTTTCATATATG 32305168 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || ||||||||| |||| Sbjct 32305167 CCGTCAATGCTATCATCTTTCAT 32305145 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||||| ||| || | ||| |||||||||||| | |||||| ||| || | ||| | Sbjct 32305006 GTTCCTGCATTGAAGAGTGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATGG 32304947 Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718 || |||| || | ||||| ||||| | ||| || || || | || ||| | ||| | Sbjct 32304946 TAAGTTTGGATCGCGGAATCAATATCATCCTTG-TGAATGCCAACAGCTACCCTCATCAG 32304888 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | |||||| |||||||||| ||| | | ||| || || |||||| | || | Sbjct 32304887 CATGTGTTGAGGCCTTTCAACAACTTTCCCTTCGACTTTTAAGAGGTATGATCTCTCAAG 32304828 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827 |||||||| ||||| | | |||| ||| || ||||| || ||| Sbjct 32304827 AGTTTTAAATCCAAAGAAATCGTATTCAAAATCACGATCATAGATTATT 32304779 >seq16 Length=29110212 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||||| || | || | | |||||| ||||||||| Sbjct 22277659 CCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACCA 22277600 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || ||| ||||||||| | || | |||||| ||||||| Sbjct 22277599 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAATTGAA 22277540 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || ||| ||| | ||||||| ||| || || ||||| || Sbjct 22277539 ACACCAATACCCCCAGCTGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 22277480 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || ||||||||| |||| Sbjct 22277479 CCGTCAATGCTATCATCTTTCAT 22277457 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||||| ||| || | ||| |||||||||||| | |||||| ||| || | ||| | Sbjct 22277320 GTTCCTGCATTGAAGAGTGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATGG 22277261 Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718 || |||| || | ||||| ||||| | ||| || || || | || ||| | ||| | Sbjct 22277260 TAAGTTTGGATCGCGGAATCAATATCATCCTTG-TGAATGCCAACAGCTACCCTCATCAG 22277202 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | |||||| |||||||||| ||| | | ||| || || |||||| | || | Sbjct 22277201 CATGTGTTGAGGCCTTTCAACAACTTTCCCTTCGACTTTTAAGAGGTATGATCTCTCAAG 22277142 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827 |||||||| ||||| | | |||| ||| || ||||| || ||| Sbjct 22277141 AGTTTTAAATCCAAAGAAATCGTATTCAAAATCACGATCATAGATTATT 22277093 >seq7 Length=33617777 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||||| || | || | | |||||| ||||||||| Sbjct 26389525 CCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACCA 26389466 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || ||| ||||||||| | || | ||||| ||||||| Sbjct 26389465 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTGTGAATTGAA 26389406 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || ||| ||| | ||||||| ||| || || ||||| || Sbjct 26389405 ACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 26389346 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || ||||||||| |||| Sbjct 26389345 CCGTCAATGCTATCATCTTTCAT 26389323 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||||| ||| || | ||| |||||||||||| | |||||| ||| || | ||| | Sbjct 26389186 GTTCCTGCATTGAAGAGTGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATGG 26389127 Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718 || |||| || | ||||| ||||| | ||| || || || | || ||| | ||| | Sbjct 26389126 TAAGTTTGGATCGCGGAATCAATATCATCCTTG-TGAATGCCAACAGCTACCCTCATCAG 26389068 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | |||||| |||||||||| ||| | | | | || || |||||| | || | Sbjct 26389067 CATGTGTTGAGGCCTTTCAACAACTTTCCCTTCGACTCTTAAGAGGTATGATCTCTCAAG 26389008 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827 |||||||| ||||| | | |||| ||| || ||||| || ||| Sbjct 26389007 AGTTTTAAATCCAAAGAAATCGTATTCAAAATCACGATCATAGATTATT 26388959 >seq10 Length=25316904 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | ||| | ||||||| || |||| | | |||||| ||||||||| Sbjct 542225 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAAAACCCGCAGCATTGGAACAATACCA 542166 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| ||||| || || ||| ||||||||| | || | || || || ||| Sbjct 542165 TTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGAT 542106 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| ||||| | ||| ||| | ||||||| ||| | || ||||| ||| Sbjct 542105 ACACCAATACCCCCTGCTAATTTGCTTATAACAGCACACTCTTTCAACGTGTCATATATT 542046 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| || |||||||| |||| Sbjct 542045 CCTTCGATGCTATCATCCTTCAT 542023 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||||||||| || | || |||| |||||| | |||||| || || | || | Sbjct 541889 GTTCCTGAATTGAAGAGAGTAGGAGTTGCATGGGTGAACCATCGCTGAGACATTAAATGG 541830 Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718 || || ||| ||||||| ||||| | ||| | |||||| | ||| || | ||| | Sbjct 541829 TAAGTAGTGATAGCAGAATCAATATCTTCCTTG-TATATACCAACAGAAACCCTCATCAG 541771 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | |||||| |||||||| | |||| | | |||||| || |||||||| || | Sbjct 541770 CATGTGTTGAGGCCTTTCAACCACTTTGCCTTGCACTTTCAAGAGGTATGATTTCTCAAG 541711 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827 |||||||| ||||| || | |||| ||| ||| ||||| | | ||| Sbjct 541710 CGTTTTAAATCCAAAGTAATCGTATTCAAAATCGCGATCATAATTGATT 541662 >seq12 Length=33044737 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||||||||| || | || |||| |||||| | |||||| || || | || | Sbjct 564068 GTTCCTGAATTGAAGAGAGTAGGAGTTGCATGGGTGAACCATCGCTGAGACATTAAATGG 564009 Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718 || || ||| ||||||| ||||| | ||| || ||||| | ||| || | ||| | Sbjct 564008 TAAGTAGTGATAGCAGAATCAATATCTTCCTTG-TGGATACCAACAGAAACCCTCATCAG 563950 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | |||||| |||||||| | |||| | | ||| || || |||||||| || | Sbjct 563949 CATGTGTTGAGGCCTTTCAACCACTTTGCCTTGCACTTTTAAGAGGTATGATTTCTCAAG 563890 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827 |||||||| ||||| || | ||| ||| ||| ||||| ||| ||| Sbjct 563889 CGTTTTAAATCCAAAGTAATCATATTCAAAATCGCGATCATAAATGATT 563841 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | ||||| ||||||| || | || | | |||||| ||||||||| Sbjct 564398 CCTCCTTGGTCAACATATCGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACCA 564339 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| ||||| || || ||| ||||||||| | || | || || || ||| Sbjct 564338 TTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGAT 564279 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || | ||| ||| | ||||||| ||| | || ||||| ||| Sbjct 564278 ACACCAATACCCCCAGCTAATTTGCTTATAACAGCACACTCTTTCAACGTGTCATATATT 564219 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || |||||||| |||| Sbjct 564218 CCCTCGATGCTATCATCCTTCAT 564196 >seq11 Length=49703607 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | || | ||||||| || | || | | |||||| ||||||||| Sbjct 646819 CCTCCTTGGTCAACGTAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATACCA 646760 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| ||||| || || ||| ||||||||| | || | || || || ||| Sbjct 646759 TTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGAT 646700 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| ||||| | ||| ||| | ||||||| ||| | || ||||||||| Sbjct 646699 ACACCAATACCGCCTGCTAATTTGCTTATAACAGCACACTCTTTCAACGTGTCATAAATT 646640 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || |||||||| |||| Sbjct 646639 CCCTCGATGCTATCATCCTTCAT 646617 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||||||||| || | || |||| |||||| | |||||| || || | || | Sbjct 646489 GTTCCTGAATTGAAGAGAGTAGGAGTTGCATGGGTGAACCATCGCTGAGACATTAAATGG 646430 Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718 || || ||| ||||||| ||||| | ||| || ||||| | || || | ||| | Sbjct 646429 TAAGTAGTGATAGCAGAATCGATATCTTCCTTG-TGGATACCAACTGAAACCCTCATCAG 646371 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | |||||| || ||||| | ||| | | ||| || || |||||||| || | Sbjct 646370 CATGTGTTGAGGCCTCTCAACCACTTTTCCTTGCACTTTTAAGAGGTATGATTTCTCAAG 646311 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827 |||||||| ||||| || | || ||| ||| ||||| ||| ||| Sbjct 646310 CGTTTTAAATCCAAAGTAATCATACTCAAAATCGCGATCATAAATGATT 646262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561847335091680