Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq16 104 5e-17 seq7 98.7 2e-15 seq9 95.1 3e-14 >seq16 Length=29110212 Score = 104 bits (114), Expect = 5e-17 Identities = 275/414 (66%), Gaps = 12/414 (3%) Strand=Plus/Minus Query 150364 GATTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAA 150423 |||||| || | | ||| || || ||| || | | |||||||||| || |||||||| Sbjct 19514701 GATTCTCTCAAGAAGAACTAAGAACAATCCTGTGCTTATTGGTGAACCTGGAGTTGGTAA 19514642 Query 150424 AACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTAT 150483 |||| | ||||| || ||||||||| | || | || || |||||||| | | | Sbjct 19514641 AACAGCTGTGGTTGAAGGTTTAGCACAAAGGATTGTGAAAGGAGATGTTCCCAACAGTCT 19514582 Query 150484 GAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCG 150543 | ||||| | | |||||||| | ||||||||||| ||||||| ||||||| || Sbjct 19514581 TACTGATGTCAGATTGATTTCTTTGGACATGGGTGCATTAGTTGCTGGTGCTAAGTACCG 19514522 Query 150544 TGGTGAATTCGAAGAACG--TGTAGACAATTTGCTACAAGAACTAAAAGAACGCGATG-- 150599 || || || |||||| | || | | ||| | ||||| | | ||| || | Sbjct 19514521 AGGAGAGTTTGAAGAAAGATTGAAAGCTGTTT--TGAAAGAAGTTGAGGAAGCTGAAGGC 19514464 Query 150600 -ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGC 150658 | || ||||| || || ||||| || ||| || | ||||||||| ||| | Sbjct 19514463 AAAGTGATTCTCTTTATTGATGAGATTCATTTGGTTCTTGGTGCTGGTAAAACT---GAA 19514407 Query 150659 GGTTCTTTGGATATGAGC-AATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGTGT 150717 || || ||||| ||| ||| |||| || || || || | ||| | |||| Sbjct 19514406 GGGTCGATGGAT-GCAGCTAATCTGTTCAAGCCCATGTTAGCTAGAGGTCAGCTTCGATG 19514348 Query 150718 CATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGC 150771 ||| ||||| ||||| || || ||| | ||| | |||| |||||||| || Sbjct 19514347 CATTGGTGCTACAACGCTTGAGGAGTATAGGAAATATGTTGAGAAAGATGCTGC 19514294 >seq7 Length=33617777 Score = 98.7 bits (108), Expect = 2e-15 Identities = 278/416 (67%), Gaps = 16/416 (4%) Strand=Plus/Minus Query 150364 GATTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAA 150423 ||||||||| | | || || || ||| || | | ||||||||||||| || ||||| Sbjct 23429779 GATTCTTTCAAGAAGGACAAAGAACAATCCTGTGCTTATTGGTGAACCAGGAGTGGGTAA 23429720 Query 150424 AACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTAT 150483 |||| | ||||| || ||||||||| | || | || || |||||||| | | | Sbjct 23429719 AACAGCTGTGGTTGAAGGTTTAGCACAAAGGATTGTGAAAGGAGATGTTCCCAACAGTCT 23429660 Query 150484 GAAAGATGTTGAAATT-CTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATC 150542 | |||| ||| ||| |||||||| | ||||||||||| ||| ||| |||| || | Sbjct 23429659 TACTGATG-TGAGATTGATTTCTTTGGACATGGGTGCATTAGTTGCGGGTGCTAAATACC 23429601 Query 150543 GTGGTGAATTCGAAGAACG--TGTAGACAATTTGCTACAAGAACTAAAAGAACGCGATG- 150599 | || || || |||||| | || | | ||| | ||||| | | ||| || | Sbjct 23429600 GAGGAGAGTTTGAAGAAAGATTGAAAGCTGTTT--TGAAAGAAGTTGAGGAAGCTGAAGG 23429543 Query 150600 --ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGG 150657 | || ||||| || |||||||| || ||| || | || |||||| ||| | Sbjct 23429542 CAAAGTGATTCTCTTTATCGATGAGATTCATTTGGTTCTTGGAGCTGGTAAAACT---GA 23429486 Query 150658 CGGTTCTTTGGATATGAGC-AATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG-T 150715 || || ||||| ||| ||| |||| || || || || | ||| | |||| | Sbjct 23429485 AGGGTCGATGGAT-GCAGCTAATCTGTTCAAGCCCATGTTAGCTAGAGGTCAGCTTCGAT 23429427 Query 150716 GTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGC 150771 || || ||||| ||||| || || ||| | ||| | |||| |||||||| || Sbjct 23429426 GT-ATTGGTGCTACAACGCTTGAGGAGTATAGGAAATATGTTGAGAAAGATGCTGC 23429372 Score = 96.9 bits (106), Expect = 8e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 150364 GATTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAA 150423 ||||||||| | | || || || ||| || | | ||||||||||||| || ||||| Sbjct 23428613 GATTCTTTCAAGAAGGACAAAGAACAATCCTGTGCTTATTGGTGAACCAGGAGTGGGTAA 23428554 Query 150424 AACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTAT 150483 |||| | ||||| || ||||||||| | || | || || |||||||| | | | Sbjct 23428553 AACAGCTGTGGTTGAAGGTTTAGCACAAAGGATTGTGAAAGGAGATGTTCCCAACAGTCT 23428494 Query 150484 GAAAGATGTTGAAATT-CTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATC 150542 | |||| ||| ||| |||||||| | ||||||||||| ||| ||| |||| || | Sbjct 23428493 TACTGATG-TGAGATTGATTTCTTTGGACATGGGTGCATTAGTTGCGGGTGCTAAATACC 23428435 Query 150543 GTGGTGAATTCGAAGAA 150559 | || || || |||||| Sbjct 23428434 GAGGAGAGTTTGAAGAA 23428418 >seq9 Length=38094978 Score = 95.1 bits (104), Expect = 3e-14 Identities = 275/415 (66%), Gaps = 14/415 (3%) Strand=Plus/Minus Query 150364 GATTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAA 150423 ||||||||| | | || || || ||| || | | ||||||| ||||| |||||||| Sbjct 29780150 GATTCTTTCAAGGAGGACTAAGAACAATCCTGTGCTTATTGGTGAGCCAGGGGTTGGTAA 29780091 Query 150424 AACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTAT 150483 |||| | ||||| || |||||||| | || | || || ||||| || | | | Sbjct 29780090 AACAGCTGTGGTTGAAGGTTTAGCACAGAGGATTGTGAAGGGAGATGTGCCCAACAGTCT 29780031 Query 150484 GAAAGATGTTGAAATT-CTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATC 150542 | |||| ||| ||| |||||||| | ||||||||||| ||| ||| ||||||| | Sbjct 29780030 TACTGATG-TGAGATTGATTTCTTTGGACATGGGTGCATTAGTTGCGGGTGCTAAGTACC 29779972 Query 150543 GTGGTGAATTCGAAGAACG--TGTAGACAATTTGCTACAAGAACTAAAAGAACGCGATG- 150599 | || || || |||||| | || | | ||| | ||||| | | || || | Sbjct 29779971 GAGGAGAGTTTGAAGAAAGACTGAAAGCTGTTT--TGAAAGAAGTTGAGGATGCTGAAGG 29779914 Query 150600 --ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGG 150657 | || ||||| || || ||||| || || || | ||||||||| |||| || Sbjct 29779913 CAAAGTGATTCTCTTTATTGATGAGATTCACTTGGTTCTTGGTGCTGGTAAAACTGAAGG 29779854 Query 150658 CGGTTCTTTGGATATGAGC-AATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGTG 150716 | || ||||| ||| ||| |||| || ||| || || | ||| | |||| Sbjct 29779853 C---TCGATGGAT-GCAGCTAATCTGTTCAAGCCTATGTTAGCTAGAGGTCAGCTTCGAT 29779798 Query 150717 TCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGC 150771 ||| ||||| ||||| || || ||| | ||| | |||| |||||||| || Sbjct 29779797 GCATTGGTGCTACAACGCTTGAGGAGTATAGGAAATATGTTGAGAAAGATGCTGC 29779743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147043253283576