Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq36 609 3e-169 seq16 609 3e-169 seq18 466 2e-126 >seq36 Length=171746 Score = 609 bits (674), Expect = 3e-169 Identities = 734/996 (74%), Gaps = 12/996 (1%) Strand=Plus/Minus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||||||||| | ||| ||| || || | || | || ||||||||||| |||||| Sbjct 56621 TGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTGATG 56562 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCA 162621 |||||| ||| | | ||| | || || || || ||||||||||| || |||||| Sbjct 56561 ATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCTCCA 56502 Query 162622 GTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATC 162681 || ||||| |||||||| | ||||||||| | || || ||||| || || ||||| || Sbjct 56501 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATT 56442 Query 162682 ATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGG 162741 || || ||||| | |||||| ||| ||||||||| | || || || || |||||| Sbjct 56441 ATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGG 56382 Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTC 162801 ||||| ||| | ||||||| ||| | || || ||||| |||| |||| | || | Sbjct 56381 GAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTA 56322 Query 162802 CACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGC 162858 ||||| | | || | ||| | | | |||||| ||||||||||| || ||| Sbjct 56321 CACTTTTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 56265 Query 162859 TTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCT 162918 | ||||||||||||||||| ||||||||| || || || || | || || ||| Sbjct 56264 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCT 56205 Query 162919 GTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATT 162978 || |||||| ||||||| | ||||| || ||| ||||| | |||||||| || || Sbjct 56204 GTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 56145 Query 162979 TCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCC 163038 ||||||||||| |||| ||| | || ||||| || ||||||||||| || |||||||| Sbjct 56144 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 56085 Query 163039 TTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGT 163098 || || ||| | || || || ||||||||||| || || || |||||||||||||| ||| Sbjct 56084 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 56025 Query 163099 TCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGT 163158 || | || |||||| | | ||||| ||||| || || | || || || | ||| Sbjct 56024 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 55965 Query 163159 TATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGT 163218 || | ||||| ||||||||||| |||||||||||||| |||||||| || || ||||| Sbjct 55964 TACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 55905 Query 163219 CGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCT 163278 || ||||||||||| ||||| ||||||||| || ||||| | || |||||| | || Sbjct 55904 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 55845 Query 163279 GCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAAC 163338 || | || || || | || ||||| ||||| | ||| | |||||||| |||||| Sbjct 55844 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 55785 Query 163339 CTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCT 163395 || || |||||||| ||||||||||| || ||||| ||| || || ||| | Sbjct 55784 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGT---GTTATTAAT 55728 Query 163396 ACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAAT 163455 |||||||| ||||| ||||| | || |||||||||||||||||||| || |||||| Sbjct 55727 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 55668 Query 163456 GCTCACAACTTCCCACTTGACCTTGCTGCTGCTGAG 163491 |||||||||||||| || ||||| ||||||| |||| Sbjct 55667 GCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 55632 >seq16 Length=29110212 Score = 609 bits (674), Expect = 3e-169 Identities = 734/996 (74%), Gaps = 12/996 (1%) Strand=Plus/Plus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||||||||| | ||| ||| || || | || | || ||||||||||| |||||| Sbjct 16535133 TGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTGATG 16535192 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCA 162621 |||||| ||| | | ||| | || || || || ||||||||||| || |||||| Sbjct 16535193 ATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCTCCA 16535252 Query 162622 GTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATC 162681 || ||||| |||||||| | ||||||||| | || || ||||| || || ||||| || Sbjct 16535253 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATT 16535312 Query 162682 ATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGG 162741 || || ||||| | |||||| ||| ||||||||| | || || || || |||||| Sbjct 16535313 ATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGG 16535372 Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTC 162801 ||||| ||| | ||||||| ||| | || || ||||| |||| |||| | || | Sbjct 16535373 GAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTA 16535432 Query 162802 CACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGC 162858 ||||| | | || | ||| | | | |||||| ||||||||||| || ||| Sbjct 16535433 CACTTTTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 16535489 Query 162859 TTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCT 162918 | ||||||||||||||||| ||||||||| || || || || | || || ||| Sbjct 16535490 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCT 16535549 Query 162919 GTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATT 162978 || |||||| ||||||| | ||||| || ||| ||||| | |||||||| || || Sbjct 16535550 GTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 16535609 Query 162979 TCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCC 163038 ||||||||||| |||| ||| | || ||||| || ||||||||||| || |||||||| Sbjct 16535610 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 16535669 Query 163039 TTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGT 163098 || || ||| | || || || ||||||||||| || || || |||||||||||||| ||| Sbjct 16535670 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 16535729 Query 163099 TCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGT 163158 || | || |||||| | | ||||| ||||| || || | || || || | ||| Sbjct 16535730 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 16535789 Query 163159 TATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGT 163218 || | ||||| ||||||||||| |||||||||||||| |||||||| || || ||||| Sbjct 16535790 TACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 16535849 Query 163219 CGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCT 163278 || ||||||||||| ||||| ||||||||| || ||||| | || |||||| | || Sbjct 16535850 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 16535909 Query 163279 GCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAAC 163338 || | || || || | || ||||| ||||| | ||| | |||||||| |||||| Sbjct 16535910 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 16535969 Query 163339 CTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCT 163395 || || |||||||| ||||||||||| || ||||| ||| || || ||| | Sbjct 16535970 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGT---GTTATTAAT 16536026 Query 163396 ACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAAT 163455 |||||||| ||||| ||||| | || |||||||||||||||||||| || |||||| Sbjct 16536027 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 16536086 Query 163456 GCTCACAACTTCCCACTTGACCTTGCTGCTGCTGAG 163491 |||||||||||||| || ||||| ||||||| |||| Sbjct 16536087 GCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 16536122 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 163427 TTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 163486 ||||||||||||||||||| || |||||||||||||||||||| || ||||| ||||||| Sbjct 26298428 TTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTG 26298487 Query 163487 CTG 163489 || Sbjct 26298488 TTG 26298490 >seq18 Length=20869551 Score = 466 bits (516), Expect = 2e-126 Identities = 502/663 (76%), Gaps = 6/663 (1%) Strand=Plus/Minus Query 162832 GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATAC 162891 |||||| ||||||||||| || ||| | ||||||||||||||||| ||||||||| Sbjct 2057444 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATAT 2057385 Query 162892 TCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCT 162951 || || || || | | || ||||| |||||| ||||||| | ||||| || | Sbjct 2057384 TCAGCTCCTGTTGCAGTTGCGACTGCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGT 2057325 Query 162952 TTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAA 163011 || ||||| | |||||||| || || ||||||||||| |||| ||| | || ||||| Sbjct 2057324 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAG 2057265 Query 163012 GCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGT 163071 || ||||||||||| || |||||||| || || ||| | || || || ||||||||||| Sbjct 2057264 GCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 2057205 Query 163072 GGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACT 163131 || || || |||||||||||||| ||||| | || |||||| | | ||||| ||||| Sbjct 2057204 GGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACC 2057145 Query 163132 ACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAAC 163191 || || | || || || | ||||| | ||||| ||||||||||| ||||||||| Sbjct 2057144 ACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAAC 2057085 Query 163192 ATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAAC 163251 ||||| |||||||| || || ||||| || ||||||||||| ||||| ||||||||| Sbjct 2057084 ATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAT 2057025 Query 163252 TCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCA 163311 || ||||| | || |||||| | || || | || || || | || ||||| ||||| Sbjct 2057024 TCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCT 2056965 Query 163312 ATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTT 163371 | ||| | |||||||| |||||||| || |||||||| ||||||||||| || ||| Sbjct 2056964 TTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTT 2056905 Query 163372 GA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTT 163428 || ||| || || ||| ||||||||| ||||| ||||| | || ||| Sbjct 2056904 GATAGTCAAGGACGT---GTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTT 2056848 Query 163429 GGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCT 163488 ||||||||||||||||| || |||||||||||||||||||| || ||||| ||||||| | Sbjct 2056847 GGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTT 2056788 Query 163489 GAG 163491 ||| Sbjct 2056787 GAG 2056785 Score = 262 bits (290), Expect = 4e-65 Identities = 284/375 (76%), Gaps = 6/375 (2%) Strand=Plus/Minus Query 163120 ATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAA 163179 ||||| ||||| || || | || || || | ||||| | ||||| ||||||||| Sbjct 2056511 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAA 2056452 Query 163180 GAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCA 163239 || |||||||||||||| |||||||| || || ||||| || ||||||||||| ||||| Sbjct 2056451 GAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCT 2056392 Query 163240 TCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATC 163299 ||||||||| || ||||| | || |||||| | || || | || || || | || Sbjct 2056391 AGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATT 2056332 Query 163300 TGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAAC 163359 ||||| ||||| | ||| | |||||||| |||||||| || |||||||| |||||| Sbjct 2056331 TGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAAC 2056272 Query 163360 CAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAAC 163416 ||||| || ||||| ||| || || ||| ||||||||| ||||| ||||| Sbjct 2056271 CAATCAGTAGTTGATAGTCAAGGACGT---GTTATTAATACTTGGGCTGATATTATTAAC 2056215 Query 163417 AGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGAC 163476 | || |||||||||||||||||||| || |||||||||||||||||||| || ||| Sbjct 2056214 CGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGAC 2056155 Query 163477 CTTGCTGCTGCTGAG 163491 || ||||||| |||| Sbjct 2056154 CTAGCTGCTGTTGAG 2056140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552827532605280