Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq6 158 2e-33 seq9 152 1e-31 seq4 147 4e-30 >seq6 Length=26391736 Score = 158 bits (174), Expect = 2e-33 Identities = 441/667 (66%), Gaps = 25/667 (4%) Strand=Plus/Plus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAG-- 48097 ||||||| |||| |||| ||| || || | ||| || ||| ||||| |||| | Sbjct 4050921 AAACTCCCTCTCGATCTCCACCGCGTCGCACACGATGGACTTCACGCG---CTCTTCGCT 4050977 Query 48098 --GGTT--TGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCC 48153 | || ||||| ||| || || ||||| | ||| || ||||| | ||| | || Sbjct 4050978 CAGCTTCGTGTTG---AGGAGCGTG---TAGAGAAGGCACGCGAAGTCGCAGTGTAGACC 4051031 Query 48154 TTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTT 48213 |||||| || |||||| |||| ||||| || |||||||||| || | || || Sbjct 4051032 TTCGTCACGCGAGATGAGTTCGTTTGAGAAAGTAAGGCCAGGCATGAGTCCTCGCTTCTT 4051091 Query 48214 GAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||| |||| ||| || ||||||||||| || || || ||||| || Sbjct 4051092 AAGCCAGAAGATTGAGCAGAAGCTTCCGGAGAAGAAGATACCTTCGACGCAAGCGAAAGC 4051151 Query 48274 GGTGAGCCTCTCTCCGAAAGAA-GCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTG 48332 | ||| | || |||| | | | || ||| |||||| | |||||| | | Sbjct 4051152 GATGATTCGTTCAGCGAAGGTCTGAGATCC-GTC---GATCCATTTCATCGCCCACTGAG 4051207 Query 48333 CCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTG 48392 | |||||| || ||| || || ||||| || || |||||||| | | | ||| Sbjct 4051208 CTTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTCTCTCTCTTTGT 4051267 Query 48393 CGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAG 48452 ||| | || ||| ||| || ||||||||| ||||| | |||||| || | Sbjct 4051268 TGTCTTTGATGTAAGTATCGAGGAGGAGACTGTACATCTCGGAGTGGATATTCTCAATCG 4051327 Query 48453 CGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCT 48512 |||||||||| |||||||| || | ||||| | || || || || | ||| | Sbjct 4051328 CGATCTGGAATCCGTAGAAAGCACGCGCCTCCGAGACTTGGACATCGGACATGAAAC-GG 4051386 Query 48513 CCAGC-AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTA 48571 ||| |||||||| || || || ||||| || || |||||||| ||||| ||||| Sbjct 4051387 GAAGCGAGATTCTCTAACACGATTCCGTCTGACGCGGCGAAGAAGGCGAGGACGTGTTTG 4051446 Query 48572 AGGAAATGGCGCTCGTTGTGGGTGAGAGCATT---CCAGCCCTGTACGTCTTTGCCCAGG 48628 | ||| ||||| ||| || | |||| || |||| | | ||||| || Sbjct 4051447 ATGAAGTGGCGTTCGCCGTCGTTGAGGCTGTTCTCCCAGTCGCGGTTGTCTTGAGATAGA 4051506 Query 48629 TCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCC 48688 || |||||||| | ||||||||||| || ||||| |||||||| |||| || | Sbjct 4051507 TCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGTACATCTCCCAGATCTGT 4051566 Query 48689 GGATAGT 48695 || |||| Sbjct 4051567 GGGTAGT 4051573 >seq9 Length=38094978 Score = 152 bits (168), Expect = 1e-31 Identities = 440/667 (66%), Gaps = 25/667 (4%) Strand=Plus/Plus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAG-- 48097 ||||||| |||| |||| ||| || || | ||| ||| ||| ||||| |||| | Sbjct 5073734 AAACTCCCTCTCGATCTCCACCGCGTCGCACACGATCGACTTCACGCG---CTCTTCGCT 5073790 Query 48098 --GGTT--TGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCC 48153 | || ||||| ||| || || ||||| | ||| || ||||| | ||| | || Sbjct 5073791 CAGCTTCGTGTTG---AGGAGCGTG---TAGAGAAGGCAAGCGAAGTCGCAGTGTAGACC 5073844 Query 48154 TTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTT 48213 |||||| || ||| || |||| ||||| || |||||||||| || | | || Sbjct 5073845 TTCGTCACGCGAGATCAGTTCGTTTGAGAAAGTAAGGCCAGGCATGAGACCTCGTTTCTT 5073904 Query 48214 GAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||| |||| ||| || ||||||||||| || || || ||||| || Sbjct 5073905 AAGCCAGAAGATTGAGCAGAAGCTTCCGGAGAAGAAGATACCTTCGACGCAAGCGAAAGC 5073964 Query 48274 GGTGAGCCTCTCTCCGAAAGAA-GCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTG 48332 | ||| | || |||| | | | || ||| |||||| | | ||||| | | Sbjct 5073965 GATGATTCGTTCAGCGAAGGTTTGAGATCC-GTC---GATCCATGTCATAGCCCACTGGG 5074020 Query 48333 CCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTG 48392 | |||||| || ||| || || || || || || |||||||| | | | ||| Sbjct 5074021 CTTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCGGAAGAGATGGTCTCTCTCTTTAT 5074080 Query 48393 CGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAG 48452 ||| | || ||| ||| || ||||||||| ||||| | |||||| || | Sbjct 5074081 TGTCTTTGATGTAAGTATCGAGGAGGAGACTGTACATCTCGGAGTGGATATTCTCAATCG 5074140 Query 48453 CGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCT 48512 |||||||||| |||||||| || | ||||| | || || || || | ||| | Sbjct 5074141 CGATCTGGAATCCGTAGAAAGCACGCGCCTCCGAGACTTGGACATCGGACATGAAAC-GG 5074199 Query 48513 CCAGC-AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTA 48571 ||| |||||||| || || || ||||| || || |||||||| ||||| ||||| Sbjct 5074200 GAAGCGAGATTCTCTAACACGATTCCGTCTGACGCGGCGAAGAAGGCGAGGACGTGTTTG 5074259 Query 48572 AGGAAATGGCGCTCGTTGTGGGTGAGAGCATT---CCAGCCCTGTACGTCTTTGCCCAGG 48628 | ||| ||||| ||| || | |||| || |||| | | ||||| || Sbjct 5074260 ATGAAGTGGCGTTCGCCGTCGTTGAGGCTGTTTTCCCAGTCGCGGTTGTCTTGTGATAGA 5074319 Query 48629 TCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCC 48688 || |||||||| ||||||||||||| || ||||| |||||||| |||| || | Sbjct 5074320 TCTACTTCTTCGGCAGTCCAGAAGGATGCTTCGGCTTTCTTGTACATCTCCCAGATCTGT 5074379 Query 48689 GGATAGT 48695 || |||| Sbjct 5074380 GGGTAGT 5074386 >seq4 Length=30110606 Score = 147 bits (162), Expect = 4e-30 Identities = 437/664 (66%), Gaps = 19/664 (3%) Strand=Plus/Plus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTC--TGAG 48097 ||||||| |||| |||| ||| || || | ||| || ||| ||||| || |||| Sbjct 6029350 AAACTCCCTCTCGATCTCCACCGCGTCGCACACGATAGACTTCACGCGCTCTTCGCTGAG 6029409 Query 48098 GGTT-TGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTC 48156 | ||||| ||| || || ||||| | ||| || ||||| | ||| | ||||| Sbjct 6029410 CTTCGTGTTG---AGGAGCGTG---TAGAGAAGGCACGCGAAGTCGCAGTGTAGACCTTC 6029463 Query 48157 GTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAG 48216 ||| || ||| || |||| ||||| || |||||||||| || | | || || Sbjct 6029464 GTCACGCGAGATCAGTTCGTTTGAGAAAGTAAGGCCAGGCATGAGTCCTCGTTTCTTAAG 6029523 Query 48217 CCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGT 48276 |||||| |||| ||| || ||||||||||| || || || ||||| || | Sbjct 6029524 CCAGAAGATTGAGCAGAAGCTTCCGGAGAAGAAGATACCTTCGACGCAAGCGAAAGCTAT 6029583 Query 48277 GAGCCTCTCTCCGAAAGAA-GCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCT 48335 || | || |||| | | | || | || |||||| | |||||| | || | Sbjct 6029584 GATTCGTTCAGCGAAGGTCTGAGATCCT-TC---GATCCATTTCATCGCCCACTGAGCTT 6029639 Query 48336 TCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGT 48395 ||||| || ||| || || || || || || |||||||| | | | ||| || Sbjct 6029640 TCTTCGCGACGCAAGGGATGGTTTCAATCGCGCGGAAGAGATGGTCTCTCTCTTTGTTGT 6029699 Query 48396 CCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGA 48455 | | || ||| ||| || ||||||||| ||||| | ||||| || |||| Sbjct 6029700 CTTTGATGTAAGTATCGAGGAGGAGACTGTACATCTCGGAGTGGATGTTCTCAATCGCGA 6029759 Query 48456 TCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCA 48515 ||||||| ||||||||||| | ||||| | || || || || | ||| | | Sbjct 6029760 TCTGGAATCCGTAGAAGGCACGCGCCTCCGAGACTTGGACATCGGACATGAAAC-GTGAG 6029818 Query 48516 GC-AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGG 48574 || |||||||| || || || ||||| || ||||||||||| ||||| ||||| | | Sbjct 6029819 GCGAGATTCTCTAGCACGATTCCGTCTGACGCGGCAAAGAAGGCGAGGACGTGTTTGATG 6029878 Query 48575 AAATGGCGCTCGTTGTGGGTGAGAGCATT---CCAGCCCTGTACGTCTTTGCCCAGGTCC 48631 || ||||| ||| || | |||| || |||| | | ||||| || || Sbjct 6029879 AAGTGGCGTTCGCCGTCGTTGAGGCTGTTCTCCCAGTCGCGGTTGTCTTGAGATAGATCT 6029938 Query 48632 ACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGA 48691 |||||||| | ||||||||||| || ||||| |||||||| |||| || | || Sbjct 6029939 ACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGG 6029998 Query 48692 TAGT 48695 |||| Sbjct 6029999 TAGT 6030002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931099497518080