Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4 109 1e-18 >seq4 Length=30110606 Score = 109 bits (120), Expect = 1e-18 Identities = 430/658 (65%), Gaps = 29/658 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||||||||||||||| || || || ||||||||||||||| | ||||| Sbjct 6029991 ATCTGGGAGATGTACAAGAAAGCCGAAGCATCCTTCTGGACCGCCGAAGAAGTAGATCTA 6029932 Query 25537 GCCAAGGACATGGACGGCTGGTA---CGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 | | |||| || |||| | | || | | | ||| | || || |||| Sbjct 6029931 TCTCAAGACAACCGCGACTGGGAGAACAGCCTCAACGACGGCGAACGCCACTTCATCAAA 6029872 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || |||||||| || || || || || ||| |||||||| | | Sbjct 6029871 CACGTCCTCGCCTTCTTTGCCGCGTCAGACGGAATCGTGCTAGAGAATCTCGCCTCACGT 6029812 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT-TTCTACGGTTTCCAGATGGCCAT 25712 |||| || || || | |||||| ||| |||||||| |||||||| || || Sbjct 6029811 TTCATGTCCGATGTCCAAGTCTCGGAGGCGC-GTGCCTTCTACGGATTCCAGATCGCGAT 6029753 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT----GATGACGTACATTACAGACG 25768 || || | ||||| ||| |||| || || || ||| || ||||| | |||| Sbjct 6029752 TGAGAACATCCACTCCGAGATGTA---CAGTCTCCTCCTCGAT-ACTTACATCAAAGACA 6029697 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 | |||||||| | || || | || || || ||| || || || || ||| | Sbjct 6029696 ACAAAGAGAGAGACCATCTCTTCCGCGCGATTGAAACCATCCCTTGCGTCGCGAAGAAAG 6029637 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCT-ACGTTTGGCGAGCGGCTGGTA 25887 | | |||||| ||||| |||||| | || || | | || || | || || | || Sbjct 6029636 CTCAGTGGGCGATGAAATGGATCGA-AG---GATCTCAGACCTTCGCTGAACGAATCATA 6029581 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCT 25946 || || ||| || || || ||||| ||| ||| || ||| | ||||||||||| Sbjct 6029580 GCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGAAGCTTCTGCT-CAATCTTCTGGCT 6029522 Query 25947 CAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGAC 26004 ||| | | | |||| |||||| || || |||||| || ||||| || ||| | ||| Sbjct 6029521 TAAG-AAACGAGGACTCATGCCTGGCCT-TACTTTCTCAAACGAACTGATCTCGCGTGAC 6029464 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCT 26064 || ||||| ||| | || || || ||||| ||||||||| || | ||| || || Sbjct 6029463 GAAGGTCTACACTGCGACTTCGCGTGCCTTCTCTACACGCTCC----TCAACACGAAGCT 6029408 Query 26065 TCTC-AAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTT 26121 | ||||| ||| | |||| | || || ||||||||||||| ||||||| Sbjct 6029407 CAGCGAAGAGCGCGTGAAGTCTATCGTGTGCGACGCGGTGGAGATCGAGAGGGAGTTT 6029350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928412747841280