Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq11 107 2e-18 seq10 107 2e-18 seq12 98.7 8e-16 seq17 87.8 2e-12 >seq11 Length=49703607 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||||||||| | || || ||||||||||| ||| ||| || Sbjct 21796017 ATGCAAATATTTGTAAAAACCCTCACCGGAAAAACCATTACTCTAGAAGTTGAAAGCTCT 21795958 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || ||||| || ||| ||||| || ||| | || || ||| Sbjct 21795957 GACACCATTGACAATGTCAAGGCGAAGATCCAAGACAAGGAAGGAATCCCTCCGGACCAA 21795898 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||||||||| || ||||| ||| | || ||| | ||| | || ||||||||| Sbjct 21795897 CAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGAACCTTAGCAGATTATAAC 21795838 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || || |||| || |||||||| |||| Sbjct 21795837 ATCCAGAAAGGGTCAACTCTGCATTTGGT 21795809 >seq10 Length=25316904 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||||||||| | || || ||||| ||||| ||| ||| || Sbjct 18593961 ATGCAAATATTTGTAAAAACCCTCACCGGAAAAACTATTACTCTAGAAGTTGAAAGCTCT 18593902 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || ||||| || ||| ||||| || ||| | || || ||| Sbjct 18593901 GACACCATTGACAATGTCAAGGCGAAGATCCAAGACAAGGAAGGAATCCCTCCGGACCAA 18593842 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||||||||| || ||||| ||| | || ||| | ||| | || ||||||||| Sbjct 18593841 CAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGAACCCTAGCAGATTATAAC 18593782 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || || ||||| || |||||||| |||| Sbjct 18593781 ATCCAGAAAGAGTCAACTCTGCATTTGGT 18593753 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| || || | || || |||||||| || || ||| ||| Sbjct 18593733 ATGCAGATATTTGTCAAGACCCTTACCGGAAAAACCATAACATTGGAGGTTGAAAGCTCA 18593674 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | | || ||||| || ||| ||||| ||||| | || || || Sbjct 18593673 GACACGATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGGATTCCTCCGGACCAG 18593614 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||||||||||||||||||||| ||| | || ||| | || | || ||||| ||| Sbjct 18593613 CAGAGACTTATCTTTGCGGGCAAGCAACTTGAGGATGGTCGGACCCTTGCGGATTACAAC 18593554 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || || ||||| || ||| | || | | |||| || ||||| Sbjct 18593553 ATCCAGAAGGAGTCTACACTTCACCTTGTTCTGCGTCTACGTGGTGGGAT 18593504 >seq12 Length=33044737 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| ||||| | || || ||||||||||| ||| ||| || Sbjct 24358135 ATGCAAATATTTGTGAAAACCCTCACCGGAAAAACCATTACTCTAGAAGTTGAAAGCTCT 24358076 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || ||||| || || ||||| || || | || || ||| Sbjct 24358075 GACACCATTGACAATGTCAAGGCGAAGATTCAAGACAAGGAAGGGATACCTCCTGACCAA 24358016 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||||||||| || ||||| ||| | || ||| | ||| | || ||||||||| Sbjct 24358015 CAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGAACCTTAGCAGATTATAAC 24357956 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || || ||||| || |||||||| |||| Sbjct 24357955 ATCCAGAAAGAGTCAACTCTGCATTTGGT 24357927 >seq17 Length=35492130 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| ||||| || || || |||| ||||||||||||||| ||| || |||| Sbjct 33393270 ATGCAGATATTCGTCAAGACCCTAACCGGTAAAACCATTACCCTAGAAGTTGAGAGTTCA 33393329 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | || || ||| ||||| || || | || |||||| Sbjct 33393330 GACACCATCGACAATGTTAAAGCTAAGATCCAGGACAAGGAAGGCATCCCTCCGGATCAA 33393389 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||| |||||||| ||||| || | |||||| | ||| | || ||||| ||| Sbjct 33393390 CAGAGACTAATCTTTGCTGGCAAGCAGCTCGAAGATGGTCGCACTCTTGCTGATTACAAC 33393449 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || || || || || ||| |||| Sbjct 33393450 ATCCAGAAGGAGTCAACTTTGCA 33393472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425211869883348