Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq36 524 2e-144 seq16 524 2e-144 seq18 389 1e-103 >seq36 Length=171746 Score = 524 bits (580), Expect = 2e-144 Identities = 711/987 (72%), Gaps = 6/987 (1%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| || ||||||||||| | |||||||| Sbjct 55641 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 55700 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||| | ||| | | |||||||| ||| | || ||||| | | || | || Sbjct 55701 AGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGA 55760 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 ||||||||| ||||| ||||| || || ||||||||||| || || | || |||| Sbjct 55761 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAA 55820 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073 ||| || | || |||||||| || ||||||||||||| | | |||||| || Sbjct 55821 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 55880 Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133 |||||||| |||||||| | || ||||| || || ||||| || ||||| || || || Sbjct 55881 ACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGT 55940 Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193 ||||||||||| || ||| | || || | || ||| ||| || || ||||| || Sbjct 55941 TTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 56000 Query 18194 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 18253 || | ||||| || | || ||||||||| |||| | || |||||||| Sbjct 56001 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATAC 56060 Query 18254 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATAC 18313 || || ||||| | ||| || || || |||||||| || ||||| || || |||||||| Sbjct 56061 ACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATAC 56120 Query 18314 GAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 18373 | ||| || ||||||||||| || || ||||||||||||||||| ||||| || || Sbjct 56121 AATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTG 56180 Query 18374 TCCAAAAGGATA-AACGAGAAATACTGAGAAG--GCAGCTGCTACTGGTGCGGAATAAGC 18430 |||| ||||| | | ||||| || || || |||||||| || || || ||||| || Sbjct 56181 ACCAATTGGATAGATCAAGAAA-AC--AGCAGTCGCAGCTGCAACAGGAGCTGAATATGC 56237 Query 18431 AACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTA 18490 |||| |||||| || |||||||| || | ||||||||||||| | || ||||| || Sbjct 56238 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATA 56297 Query 18491 AGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 18550 | || | || | | |||||| | ||||| |||| ||| || || ||||| |||| Sbjct 56298 ACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAG 56357 Query 18551 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGA 18610 ||| || || | || ||||||||||||||| ||||| || || | ||| || || ||| Sbjct 56358 CCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGA 56417 Query 18611 TGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGG 18670 | || | || || || || || || |||||||| || || | | ||| || ||||| Sbjct 56418 AGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGG 56477 Query 18671 CTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGT 18730 |||||||||||||| || || || ||||||||||||| ||||| || | ||| | | Sbjct 56478 TTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACAGA 56537 Query 18731 AGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790 || |||||| || | | ||||||||| | || || ||||| || | ||| || ||||| Sbjct 56538 AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGTAAAGACGGTT 56597 Query 18791 GTTTGTACTCGTAACCCAGTCACATAA 18817 | || || || | ||||| ||| || Sbjct 56598 TTCAGTGCTGGTTATCCAGTTACAGAA 56624 >seq16 Length=29110212 Score = 524 bits (580), Expect = 2e-144 Identities = 711/987 (72%), Gaps = 6/987 (1%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| || ||||||||||| | |||||||| Sbjct 16536113 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 16536054 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||| | ||| | | |||||||| ||| | || ||||| | | || | || Sbjct 16536053 AGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGA 16535994 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 ||||||||| ||||| ||||| || || ||||||||||| || || | || |||| Sbjct 16535993 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAA 16535934 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073 ||| || | || |||||||| || ||||||||||||| | | |||||| || Sbjct 16535933 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 16535874 Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133 |||||||| |||||||| | || ||||| || || ||||| || ||||| || || || Sbjct 16535873 ACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGT 16535814 Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193 ||||||||||| || ||| | || || | || ||| ||| || || ||||| || Sbjct 16535813 TTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 16535754 Query 18194 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 18253 || | ||||| || | || ||||||||| |||| | || |||||||| Sbjct 16535753 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATAC 16535694 Query 18254 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATAC 18313 || || ||||| | ||| || || || |||||||| || ||||| || || |||||||| Sbjct 16535693 ACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATAC 16535634 Query 18314 GAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 18373 | ||| || ||||||||||| || || ||||||||||||||||| ||||| || || Sbjct 16535633 AATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTG 16535574 Query 18374 TCCAAAAGGATAAA-CGAGAAATACTGAGAAG--GCAGCTGCTACTGGTGCGGAATAAGC 18430 |||| ||||| | | ||||| || || || |||||||| || || || ||||| || Sbjct 16535573 ACCAATTGGATAGATCAAGAAA-AC--AGCAGTCGCAGCTGCAACAGGAGCTGAATATGC 16535517 Query 18431 AACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTA 18490 |||| |||||| || |||||||| || | ||||||||||||| | || ||||| || Sbjct 16535516 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATA 16535457 Query 18491 AGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 18550 | || | || | | |||||| | ||||| |||| ||| || || ||||| |||| Sbjct 16535456 ACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAG 16535397 Query 18551 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGA 18610 ||| || || | || ||||||||||||||| ||||| || || | ||| || || ||| Sbjct 16535396 CCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGA 16535337 Query 18611 TGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGG 18670 | || | || || || || || || |||||||| || || | | ||| || ||||| Sbjct 16535336 AGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGG 16535277 Query 18671 CTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGT 18730 |||||||||||||| || || || ||||||||||||| ||||| || | ||| | | Sbjct 16535276 TTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACAGA 16535217 Query 18731 AGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790 || |||||| || | | ||||||||| | || || ||||| || | ||| || ||||| Sbjct 16535216 AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGTAAAGACGGTT 16535157 Query 18791 GTTTGTACTCGTAACCCAGTCACATAA 18817 | || || || | ||||| ||| || Sbjct 16535156 TTCAGTGCTGGTTATCCAGTTACAGAA 16535130 >seq18 Length=20869551 Score = 389 bits (430), Expect = 1e-103 Identities = 536/745 (72%), Gaps = 6/745 (1%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| || ||||||||||| | |||||||| Sbjct 2056794 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 2056853 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||| | ||| | | |||||||| ||| | || ||||| | | || | || Sbjct 2056854 AGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGA 2056913 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 ||||||||| ||||| ||||| || || ||||||||||| || || | || |||| Sbjct 2056914 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAA 2056973 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073 ||| || | || |||||||| || ||||||||||||| | | |||||| || Sbjct 2056974 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 2057033 Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133 |||||||| |||||||| | || ||||| || || ||||| || ||||| || || || Sbjct 2057034 ACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGT 2057093 Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193 ||||||||||| || ||| | || || | || ||| ||| || || ||||| || Sbjct 2057094 TTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 2057153 Query 18194 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 18253 || | ||||| || | || ||||||||| |||| | || |||||||| Sbjct 2057154 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATAC 2057213 Query 18254 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATAC 18313 || || ||||| | ||| || || || |||||||| || ||||| || || |||||||| Sbjct 2057214 ACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATAC 2057273 Query 18314 GAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 18373 | ||| || ||||||||||| || || ||||||||||||||||| ||||| || || Sbjct 2057274 AATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTG 2057333 Query 18374 TCCAAAAGGATA-AACGAGAAATACTGAGAAG--GCAGCTGCTACTGGTGCGGAATAAGC 18430 |||| ||||| | | ||||| || || || ||| |||| || || || ||||| || Sbjct 2057334 ACCAATTGGATAGATCAAGAAA-AC--AGCAGTCGCAACTGCAACAGGAGCTGAATATGC 2057390 Query 18431 AACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTA 18490 |||| |||||| || |||||||| || | ||||||||||||| | || ||||| || Sbjct 2057391 AACAACAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATA 2057450 Query 18491 AGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 18550 | || | || | | |||||| | ||||| |||| ||| || || ||||| | || Sbjct 2057451 ACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTGTAG 2057510 Query 18551 CCACTCGTCGAGGGTTGCAGCTTCC 18575 ||| || || | || |||||||||| Sbjct 2057511 CCATTCATCAACGGATGCAGCTTCC 2057535 Score = 196 bits (216), Expect = 1e-45 Identities = 261/363 (72%), Gaps = 0/363 (0%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| || ||||||||||| | |||||||| Sbjct 2056149 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 2056208 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||| | ||| | | |||||||| ||| | || ||||| | | || | || Sbjct 2056209 AGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGA 2056268 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 ||||||||| ||||| ||||| || || ||||||||||| || || | || |||| Sbjct 2056269 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAA 2056328 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073 ||| || | || |||||||| || ||||||||||||| | | |||||| || Sbjct 2056329 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 2056388 Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133 |||||||| |||||||| | || ||||| || || ||||| || ||||| || || || Sbjct 2056389 ACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGT 2056448 Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193 ||||||||||| || ||| | || || | || ||| ||| || || ||||| || Sbjct 2056449 TTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 2056508 Query 18194 AAT 18196 || Sbjct 2056509 GAT 2056511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151251533533928